RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 TRIM43Q96BQ3 446 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 GMCL1Q96IK5 515 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 ABHD16BQ9H3Z7 469 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 ACAD9Q9H845 621 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 INCENPQ9NQS7 918 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 STARD7Q9NQZ5 370 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 HELLSQ9NRZ9 838 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 STXBP5LQ9Y2K9 1186 aa13.12□□□□□ -0.31
CCDC88C-213ENST00000557455 POTEB2H3BUK9 544 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 NMT2O60551 498 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 PLA2G6O60733 806 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 PQBP1O60828 265 aaKnown RBP13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 HDAC1Q13547 482 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 SHHQ15465 462 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 KCNA10Q16322 511 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 C9orf50Q5SZB4 431 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 FAM109BQ6ICB4 259 aaPredicted RBP13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 RCSD1Q6JBY9 416 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 KCTD1Q719H9 257 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 ARMCX2Q7L311 632 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 CCDC144CPQ8IYA2 1237 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 KLHDC9Q8NEP7 349 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 AGBL1Q96MI9 1066 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 SPC25Q9HBM1 224 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 IL17RBQ9NRM6 502 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 RNF146Q9NTX7 359 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 ANAPC4Q9UJX5 808 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 MTMR7Q9Y216 660 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 ZNF536O15090 1300 aa13.11□□□□□ -0.31
CCDC88C-213ENST00000557455 ORC4O43929 436 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 C6orf222P0C671 652 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 ALAS1P13196 640 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 RAG1P15918 1043 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 ALX1Q15699 326 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 TKFCQ3LXA3 575 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 CCDC144BQ3MJ40 725 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 CCSAPQ6IQ19 270 aaPredicted RBP13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 PCSK9Q8NBP7 692 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 FGD4Q96M96 766 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 GLT1D1Q96MS3 346 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 TOX2Q96NM4 488 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 TRERF1Q96PN7 1200 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 A1CFQ9NQ94 594 aaKnown RBP13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 TOMM22Q9NS69 142 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 TMEM39AQ9NV64 488 aa13.1□□□□□ -0.31
CCDC88C-213ENST00000557455 MYADML2A6NDP7 307 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 DCDC2CA8MYV0 355 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 KIAA0355O15063 1070 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 ITGB8P26012 769 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 CST5P28325 142 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 CNTN2Q02246 1040 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 MCMDC2Q4G0Z9 681 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 RRP12Q5JTH9 1297 aaKnown RBP13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 ZNF697Q5TEC3 545 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 CCDC174Q6PII3 467 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 ANKRD33Q7Z3H0 272 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 FAM133AQ8N9E0 248 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 FAM227BQ96M60 508 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 FAM161BQ96MY7 647 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 PRR12Q9ULL5 1215 aa13.09□□□□□ -0.31
CCDC88C-213ENST00000557455 A0A0D9SFI3 127 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 ASB14A6NK59 587 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 TRIM6-TRIM34B2RNG4 842 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 ADCY6O43306 1168 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 FGAP02671 866 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 ASGR1P07306 291 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 FGRP09769 529 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 HSPD1P10809 573 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 GJA9P57773 515 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 SNAP25P60880 206 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 IRX5P78411 483 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 FAAP100Q0VG06 881 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 CCDC96Q2M329 555 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 GNASQ5JWF2 1037 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 RASGRP2Q7LDG7 609 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 TICAM2Q86XR7 235 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 DCAF4Q8WV16 495 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 VTI1AQ96AJ9 217 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 LNPKQ9C0E8 428 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 KATNBL1Q9H079 304 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 UPF3AQ9H1J1 476 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 ELP1O95163 1332 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 MROH7Q68CQ1 1323 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 LRRC37A2A6NM11 1700 aa13.08□□□□□ -0.32
CCDC88C-213ENST00000557455 LCTP09848 1927 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 SOWAHBA6NEL2 793 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 DLL1O00548 723 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 NOVP48745 357 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 FPGSQ05932 587 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 NMIQ13287 307 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 AAMPQ13685 434 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 NOL8Q76FK4 1167 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 RILPL2Q969X0 211 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 GUCD1Q96NT3 240 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 CCPG1Q9ULG6 757 aa13.07□□□□□ -0.32
CCDC88C-213ENST00000557455 A0A0U1RQG5 324 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 ICAM1P05362 532 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 TOP1P11387 765 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms