RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ARHGEF15O94989 841 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 SIAH1Q8IUQ4 282 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.93□□□□□ -0.02
SHMT2-230ENST00000557427 HLA-CQ95604 372 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 ANP32EQ9BTT0 268 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 FAM184BQ9ULE4 1060 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 ADAMTS5Q9UNA0 930 aa14.93□□□□□ -0.02
SHMT2-230ENST00000557427 PARP14Q460N5 1801 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 A0A0U1RQG5 324 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-230ENST00000557427 CTAGE5O15320 804 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 IGSF3O75054 1194 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 DUSP11O75319 330 aaKnown RBP14.92□□□□□ -0.02
SHMT2-230ENST00000557427 FLOT1O75955 427 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 SLC25A27O95847 323 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 CA3P07451 260 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 ATP5JP18859 108 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 USP5P45974 858 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 CCL23P55773 120 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 VTI1AQ96AJ9 217 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 WNT8AQ9H1J5 351 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 MTIF3Q9H2K0 278 aaKnown RBP14.92□□□□□ -0.02
SHMT2-230ENST00000557427 PAG1Q9NWQ8 432 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 CNPY2Q9Y2B0 182 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 SLC4A7Q9Y6M7 1214 aa14.92□□□□□ -0.02
SHMT2-230ENST00000557427 COL11A1P12107 1806 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-230ENST00000557427 GTPBP6O43824 516 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-230ENST00000557427 C6orf222P0C671 652 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-230ENST00000557427 PDE6AP16499 860 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 GABPAQ06546 454 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 SLFNL1Q499Z3 407 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 BMP2KLQ5H9B9 411 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 SAMD1Q6SPF0 538 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-230ENST00000557427 RIOX2Q8IUF8 465 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 SPICE1Q8N0Z3 855 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 SLC43A3Q8NBI5 491 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 FBXL18Q96ME1 805 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 UPF3AQ9H1J1 476 aaKnown RBP14.91□□□□□ -0.02
SHMT2-230ENST00000557427 HIPK3Q9H422 1215 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 ZNF532Q9HCE3 1301 aa14.91□□□□□ -0.02
SHMT2-230ENST00000557427 MAGEB6P1A0A0J9YX57 407 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 TLR3O15455 904 aaKnown RBP14.9□□□□□ -0.02
SHMT2-230ENST00000557427 ATP2A2P16615 1042 aaKnown RBP14.9□□□□□ -0.02
SHMT2-230ENST00000557427 KCTD2Q14681 263 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 SPRED2Q7Z698 418 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 TTC6Q86TZ1 520 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 CLEC10AQ8IUN9 316 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 PCSK9Q8NBP7 692 aaKnown RBP14.9□□□□□ -0.02
SHMT2-230ENST00000557427 HAUS7Q99871 368 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 UPF2Q9HAU5 1272 aaKnown RBP14.9□□□□□ -0.02
SHMT2-230ENST00000557427 FBXO28Q9NVF7 368 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 ZHX1Q9UKY1 873 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-230ENST00000557427 GRIN2DO15399 1336 aa14.9□□□□□ -0.02
SHMT2-230ENST00000557427 BRWD1Q9NSI6 2320 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 LPXNO60711 386 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 GJA9P57773 515 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 TTLL4Q14679 1199 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 GNASQ5JWF2 1037 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 TSHZ3Q63HK5 1081 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 MAMDC4Q6UXC1 1216 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 REPS2Q8NFH8 660 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 NOC4LQ9BVI4 516 aaKnown RBP14.89□□□□□ -0.03
SHMT2-230ENST00000557427 ECHDC1Q9NTX5 307 aa14.89□□□□□ -0.03
SHMT2-230ENST00000557427 ZNF214Q9UL59 606 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-230ENST00000557427 MPHOSPH10O00566 681 aaKnown RBP14.88□□□□□ -0.03
SHMT2-230ENST00000557427 SEC24BO95487 1268 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 STAT3P40763 770 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 TAP1Q03518 808 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 GRB10Q13322 594 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 TMEM67Q5HYA8 995 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 MSL3Q8N5Y2 521 aaKnown RBP14.88□□□□□ -0.03
SHMT2-230ENST00000557427 ARNTL2Q8WYA1 636 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 ANKS1AQ92625 1134 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 SCLYQ96I15 445 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 AGBL1Q96MI9 1066 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 UIMC1Q96RL1 719 aa14.88□□□□□ -0.03
SHMT2-230ENST00000557427 RIOK1Q9BRS2 568 aaKnown RBP14.88□□□□□ -0.03
SHMT2-230ENST00000557427 DNAJC25-GNG10A0A024R161 153 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 TCRBV5S4A2TA0A5A2 114 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 ZBBXA8MT70 800 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 VWA5AO00534 786 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 CHGBP05060 677 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 POLR3DP05423 398 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-230ENST00000557427 NKX3-2P78367 333 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 BEX3Q00994 111 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 ACVR2BQ13705 512 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 CCDC144BQ3MJ40 725 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 TMED8Q6PL24 325 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-230ENST00000557427 CERS3Q8IU89 383 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 FAM178BQ8IXR5 827 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 GJD3Q8N144 294 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 FGD4Q96M96 766 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 PHOX2BQ99453 314 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 CRNKL1Q9BZJ0 848 aaKnown RBP14.87□□□□□ -0.03
SHMT2-230ENST00000557427 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.87□□□□□ -0.031e-6■■□□□ 11.9
SHMT2-230ENST00000557427 TRPV6Q9H1D0 765 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 VCPKMTQ9H867 229 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 ARMT1Q9H993 441 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 TMX2Q9Y320 296 aa14.87□□□□□ -0.03
SHMT2-230ENST00000557427 ADD2P35612 726 aa14.86□□□□□ -0.03
SHMT2-230ENST00000557427 CXCL17Q6UXB2 119 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms