RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PHKBQ93100 1093 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 GTF3C6Q969F1 213 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 TMX3Q96JJ7 454 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 AGBL1Q96MI9 1066 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 LZTS2Q9BRK4 669 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 SPZ1Q9BXG8 430 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 RABGAP1Q9Y3P9 1069 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 RIPK3Q9Y572 518 aa14.89□□□□□ -0.03
SHMT2-227ENST00000557269 CCDC196A0A1B0GTZ2 297 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 CTGFP29279 349 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 ERVK-9P63128 1117 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 ERVK-24P63145 666 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 PLS1Q14651 629 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 PPP2R5BQ15173 497 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 HOMER1Q86YM7 354 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 CCDC83Q8IWF9 413 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 MB21D1Q8N884 522 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 GPRC5AQ8NFJ5 357 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 ZSCAN31Q96LW9 406 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-227ENST00000557269 MOV10L1Q9BXT6 1211 aaKnown RBP14.88□□□□□ -0.03
SHMT2-227ENST00000557269 SPATC1LQ9H0A9 340 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 PORCNQ9H237 461 aa14.88□□□□□ -0.03
SHMT2-227ENST00000557269 V9GY48 417 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-227ENST00000557269 GPR25O00155 361 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 ATP2A1O14983 1001 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 ZBTB5O15062 677 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 ICAM1P05362 532 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 IFNAR1P17181 557 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 STAT3P40763 770 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 SLC4A3P48751 1232 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 FAM110CQ1W6H9 321 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 IL27Q8NEV9 243 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 GTF3C2Q8WUA4 911 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-227ENST00000557269 BEGAINQ9BUH8 593 aa14.87□□□□□ -0.03
SHMT2-227ENST00000557269 BAZ2BQ9UIF8 2168 aaKnown RBP14.87□□□□□ -0.03
SHMT2-227ENST00000557269 PNMA6FA0A0J9YX94 578 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 FOXN1O15353 648 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 JAK2O60674 1132 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 HSPA1AP0DMV8 641 aaKnown RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 HSPA1BP0DMV9 641 aaKnown RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 FDX1P10109 184 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 MCM2P49736 904 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 OAZ1P54368 228 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 PKN1Q16512 942 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 SNRNP48Q6IEG0 339 aaKnown RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 SNX21Q969T3 373 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 RRP36Q96EU6 259 aaKnown RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 ARHGAP39Q9C0H5 1083 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 EFCC1Q9HA90 598 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 SH2B1Q9NRF2 756 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 CTDP1Q9Y5B0 961 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-227ENST00000557269 PCNTO95613 3336 aa14.86□□□□□ -0.03
SHMT2-227ENST00000557269 CPLX1O14810 134 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 PRPF3O43395 683 aaKnown RBP14.85□□□□□ -0.03
SHMT2-227ENST00000557269 FDPSP14324 419 aaKnown RBP14.85□□□□□ -0.03
SHMT2-227ENST00000557269 ERCC3P19447 782 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 USH1GQ495M9 461 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 MUM1L1Q5H9M0 696 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 RIOX2Q8IUF8 465 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 NSUN7Q8NE18 718 aaKnown RBP14.85□□□□□ -0.03
SHMT2-227ENST00000557269 ZNF296Q8WUU4 475 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-227ENST00000557269 COA7Q96BR5 231 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 SLC26A6Q9BXS9 759 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 TEX13BQ9BXU2 312 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 HOMER2Q9NSB8 354 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 CCPG1Q9ULG6 757 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 SMCHD1A6NHR9 2005 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 ZSWIM8A7E2V4 1837 aa14.85□□□□□ -0.03
SHMT2-227ENST00000557269 FMNL1O95466 1100 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-227ENST00000557269 HSPA8P11142 646 aaKnown RBP14.84□□□□□ -0.03
SHMT2-227ENST00000557269 ALAS1P13196 640 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 LACTBP83111 547 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-227ENST00000557269 SP3Q02447 781 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 NCAPG2Q86XI2 1143 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 FBXO11Q86XK2 927 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 GPKOWQ92917 476 aaPredicted RBP eCLIP14.84□□□□□ -0.03
SHMT2-227ENST00000557269 SHISA4Q96DD7 197 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 AIFM3Q96NN9 605 aa14.84□□□□□ -0.03
SHMT2-227ENST00000557269 PTPDC1A2A3K4 754 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 K7ELQ4 463 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-227ENST00000557269 OPLAHO14841 1288 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 SSRP1Q08945 709 aaKnown RBP14.83□□□□□ -0.04
SHMT2-227ENST00000557269 WWC2Q6AWC2 1192 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 TYW1BQ6NUM6 668 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 CD99L2Q8TCZ2 262 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 CLEC4DQ8WXI8 215 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 DDX11Q96FC9 970 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 TRERF1Q96PN7 1200 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 AMNQ9BXJ7 453 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 RNF26Q9BY78 433 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-227ENST00000557269 SEC63Q9UGP8 760 aaKnown RBP14.83□□□□□ -0.04
SHMT2-227ENST00000557269 PCDHA1Q9Y5I3 950 aa14.83□□□□□ -0.04
SHMT2-227ENST00000557269 NFIBO00712 420 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 FKTNO75072 461 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 CCNA1P78396 465 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 CUL4AQ13619 759 aa14.82□□□□□ -0.04
SHMT2-227ENST00000557269 PFKFB3Q16875 520 aaPredicted RBP14.82□□□□□ -0.04
SHMT2-227ENST00000557269 NOM1Q5C9Z4 860 aaKnown RBP14.82□□□□□ -0.04
SHMT2-227ENST00000557269 CPLX2Q6PUV4 134 aaKnown RBP14.82□□□□□ -0.04
SHMT2-227ENST00000557269 HEATR3Q7Z4Q2 680 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms