RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 SYDE2Q5VT97 1194 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 FOXD4L3Q6VB84 417 aaPredicted RBP27.31■■□□□ 1.96
SIX4-203ENST00000556952 DIS3L2Q8IYB7 885 aaKnown RBP27.31■■□□□ 1.96
SIX4-203ENST00000556952 STXBP3O00186 592 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 ZBTB5O15062 677 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 HSPA1AP0DMV8 641 aaKnown RBP27.31■■□□□ 1.96
SIX4-203ENST00000556952 HSPA1BP0DMV9 641 aaKnown RBP27.31■■□□□ 1.96
SIX4-203ENST00000556952 KRT85P78386 507 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 SPP2Q13103 211 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 MTMR2Q13614 643 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 ATL3Q6DD88 541 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 FAM160B2Q86V87 743 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 CHURC1Q8WUH1 139 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 GPKOWQ92917 476 aaPredicted RBP eCLIP27.31■■□□□ 1.96
SIX4-203ENST00000556952 AFG3L2Q9Y4W6 797 aa27.31■■□□□ 1.96
SIX4-203ENST00000556952 KIF28PB7ZC32 967 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 C19orf81C9J6K1 198 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 KRT2P35908 639 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 TM4SF4P48230 202 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 DNM1Q05193 864 aaKnown RBP27.3■■□□□ 1.96
SIX4-203ENST00000556952 GALNT17Q6IS24 598 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 BRI3BPQ8WY22 251 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 FEM1BQ9UK73 627 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 KCNH4Q9UQ05 1017 aa27.3■■□□□ 1.96
SIX4-203ENST00000556952 NLRP5P59047 1200 aa27.29■■□□□ 1.96
SIX4-203ENST00000556952 SREBF2Q12772 1141 aa27.29■■□□□ 1.96
SIX4-203ENST00000556952 PPP1R18Q6NYC8 613 aa27.29■■□□□ 1.96
SIX4-203ENST00000556952 C12orf42Q96LP6 360 aa27.29■■□□□ 1.96
SIX4-203ENST00000556952 PARP14Q460N5 1801 aa27.29■■□□□ 1.96
SIX4-203ENST00000556952 CCL15-CCL14A0A0B4J2E2 113 aa27.28■■□□□ 1.96
SIX4-203ENST00000556952 IGF2BP3O00425 579 aaKnown RBP eCLIP27.28■■□□□ 1.96
SIX4-203ENST00000556952 GTF2A2P52657 109 aa27.28■■□□□ 1.96
SIX4-203ENST00000556952 CCL15Q16663 113 aa27.28■■□□□ 1.96
SIX4-203ENST00000556952 PTPN18Q99952 460 aa27.28■■□□□ 1.96
SIX4-203ENST00000556952 TESPA1A2RU30 521 aaPredicted RBP27.27■■□□□ 1.96
SIX4-203ENST00000556952 BTBD18B2RXH4 712 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 NAPAP54920 295 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 SNAPC2Q13487 334 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 CDC37Q16543 378 aaPredicted RBP27.27■■□□□ 1.96
SIX4-203ENST00000556952 CSPP1Q1MSJ5 1256 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 FAM173BQ6P4H8 233 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 NOSTRINQ8IVI9 506 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 REM2Q8IYK8 340 aaPredicted RBP27.27■■□□□ 1.96
SIX4-203ENST00000556952 DAGLBQ8NCG7 672 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 CHAMP1Q96JM3 812 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 ZNF396Q96N95 335 aaPredicted RBP27.27■■□□□ 1.96
SIX4-203ENST00000556952 EMILIN3Q9NT22 766 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 PRR12Q9ULL5 1215 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 LOC285556D6RIA3 1793 aa27.27■■□□□ 1.96
SIX4-203ENST00000556952 ESYT2A0FGR8 921 aa27.26■■□□□ 1.96
SIX4-203ENST00000556952 TRIM75PA6NK02 468 aa27.26■■□□□ 1.96
SIX4-203ENST00000556952 NPY5RQ15761 445 aa27.26■■□□□ 1.96
SIX4-203ENST00000556952 TYW1BQ6NUM6 668 aa27.26■■□□□ 1.96
SIX4-203ENST00000556952 CFAP45Q9UL16 551 aa27.26■■□□□ 1.96
SIX4-203ENST00000556952 VCAM1P19320 739 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 NCLP19338 710 aaKnown RBP27.26■■□□□ 1.95
SIX4-203ENST00000556952 MOGSQ13724 837 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 QRICH1Q2TAL8 776 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 MYSM1Q5VVJ2 828 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 TMEM87AQ8NBN3 555 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 ZMYND12Q9H0C1 365 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 PCDHA4Q9UN74 947 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 CNPY2Q9Y2B0 182 aa27.26■■□□□ 1.95
SIX4-203ENST00000556952 CXCL11O14625 94 aa27.25■■□□□ 1.95
SIX4-203ENST00000556952 FOXN1O15353 648 aa27.25■■□□□ 1.95
SIX4-203ENST00000556952 IFNL1Q8IU54 200 aa27.25■■□□□ 1.95
SIX4-203ENST00000556952 SCAND2PQ9GZW5 306 aaPredicted RBP27.25■■□□□ 1.95
SIX4-203ENST00000556952 RNF186Q9NXI6 227 aa27.25■■□□□ 1.95
SIX4-203ENST00000556952 TSKSQ9UJT2 592 aa27.25■■□□□ 1.95
SIX4-203ENST00000556952 CETPP11597 493 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 GNA11P29992 359 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 INHBEP58166 350 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 TRAF1Q13077 416 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 SH3D19Q5HYK7 790 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 C6orf50Q9HD87 102 aa27.24■■□□□ 1.95
SIX4-203ENST00000556952 A0A0G2JLL6 359 aaPredicted RBP27.23■■□□□ 1.95
SIX4-203ENST00000556952 PPP1R11O60927 126 aaPredicted RBP27.23■■□□□ 1.95
SIX4-203ENST00000556952 TRPA1O75762 1119 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 NR5A1Q13285 461 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 DGKZQ13574 1117 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 PRRT2Q7Z6L0 340 aaPredicted RBP27.23■■□□□ 1.95
SIX4-203ENST00000556952 BLIDQ8IZY5 108 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 OXER1Q8TDS5 423 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 BEGAINQ9BUH8 593 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 TMOD4Q9NZQ9 345 aa27.23■■□□□ 1.95
SIX4-203ENST00000556952 HMGCS2P54868 508 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 FAM43AQ8N2R8 423 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 BICD2Q8TD16 824 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 TNFRSF25Q93038 417 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 AMNQ9BXJ7 453 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 RANBP17Q9H2T7 1088 aaKnown RBP27.22■■□□□ 1.95
SIX4-203ENST00000556952 FIBPO43427 364 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 PRPF38AQ8NAV1 312 aaKnown RBP27.22■■□□□ 1.95
SIX4-203ENST00000556952 KIFC2Q96AC6 838 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 SLF1Q9BQI6 1058 aa27.22■■□□□ 1.95
SIX4-203ENST00000556952 RPAP3Q9H6T3 665 aaPredicted RBP27.22■■□□□ 1.95
SIX4-203ENST00000556952 ELP1O95163 1332 aa27.21■■□□□ 1.95
SIX4-203ENST00000556952 SMCO2A6NFE2 343 aa27.21■■□□□ 1.95
SIX4-203ENST00000556952 BTBD19C9JJ37 291 aa27.21■■□□□ 1.95
SIX4-203ENST00000556952 FBXO11Q86XK2 927 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms