RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NAP1L2Q9ULW6 460 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-225ENST00000556798 PTPN22Q9Y2R2 807 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 PTCH2Q9Y6C5 1203 aa20.38■□□□□ 0.85
SHMT2-225ENST00000556798 ATP2A1O14983 1001 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 HOXD10P28358 340 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 FLT3LGP49771 235 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 OAZ1P54368 228 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 CDC37Q16543 378 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-225ENST00000556798 SLC35G1Q2M3R5 365 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 NBPF11Q86T75 865 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 HOMER2Q9NSB8 354 aa20.37■□□□□ 0.85
SHMT2-225ENST00000556798 LCTP09848 1927 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 ZBTB43O43298 467 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 SLC25A27O95847 323 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 CALM1P0DP23 149 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 CALM2P0DP24 149 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 CALM3P0DP25 149 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 FBXO46Q6PJ61 603 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-225ENST00000556798 SYNE3Q6ZMZ3 975 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 AGXT2Q9BYV1 514 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 C22orf23Q9BZE7 217 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 MROH8Q9H579 483 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 PDRG1Q9NUG6 133 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 CCPG1Q9ULG6 757 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 IVNS1ABPQ9Y6Y0 642 aa20.36■□□□□ 0.85
SHMT2-225ENST00000556798 GOLGA8BA8MQT2 603 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 PLEKHA8P1O95397 391 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 ICAM1P05362 532 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 ALAS1P13196 640 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 PTPREP23469 700 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 KIF5BP33176 963 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 TOB2Q14106 344 aaPredicted RBP20.35■□□□□ 0.85
SHMT2-225ENST00000556798 PKN2Q16513 984 aaKnown RBP20.35■□□□□ 0.85
SHMT2-225ENST00000556798 CMTR1Q8N1G2 835 aaKnown RBP20.35■□□□□ 0.85
SHMT2-225ENST00000556798 IL17RAQ96F46 866 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 MAP3K14Q99558 947 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 LARP6Q9BRS8 491 aaKnown RBP20.35■□□□□ 0.85
SHMT2-225ENST00000556798 JMJD4Q9H9V9 463 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 GJD2Q9UKL4 321 aa20.35■□□□□ 0.85
SHMT2-225ENST00000556798 GOLGA8AA7E2F4 631 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 CYTH3O43739 400 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 CYP2B6P20813 491 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 COPB2P35606 906 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 PRMT2P55345 433 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 GRB14Q14449 540 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 MORN1Q5T089 497 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 FBXL16Q8N461 479 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 FANCBQ8NB91 859 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 RAET1EQ8TD07 263 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 SOCS4Q8WXH5 440 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 PIBF1Q8WXW3 757 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 NUDT12Q9BQG2 462 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 RNF146Q9NTX7 359 aa20.34■□□□□ 0.85
SHMT2-225ENST00000556798 RTN1Q16799 776 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 QRICH1Q2TAL8 776 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 USH1GQ495M9 461 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 HOMER1Q86YM7 354 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 TNS4Q8IZW8 715 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 MMP19Q99542 508 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 BACH2Q9BYV9 841 aa20.33■□□□□ 0.85
SHMT2-225ENST00000556798 UPF2Q9HAU5 1272 aaKnown RBP20.33■□□□□ 0.85
SHMT2-225ENST00000556798 MCM3APO60318 1980 aa20.33■□□□□ 0.84
SHMT2-225ENST00000556798 CENPFP49454 3210 aa20.33■□□□□ 0.84
SHMT2-225ENST00000556798 SLC15A5A6NIM6 579 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 FCER1AP12319 257 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 ADORA2AP29274 412 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 MUM1L1Q5H9M0 696 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 TMTC3Q6ZXV5 915 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 SRBD1Q8N5C6 995 aaKnown RBP20.32■□□□□ 0.84
SHMT2-225ENST00000556798 USP6NLQ92738 828 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 TRERF1Q96PN7 1200 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 PIGSQ96S52 555 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 RIOX1Q9H6W3 641 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 HPS5Q9UPZ3 1129 aa20.32■□□□□ 0.84
SHMT2-225ENST00000556798 ELNP15502 786 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 RGS2P41220 211 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 RBM25P49756 843 aaKnown RBP20.31■□□□□ 0.84
SHMT2-225ENST00000556798 METAP2P50579 478 aaKnown RBP eCLIP20.31■□□□□ 0.843e-7■□□□□ 9.6
SHMT2-225ENST00000556798 MAP2K5Q13163 448 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 IRF5Q13568 498 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 KCTD2Q14681 263 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 CCDC82Q8N4S0 544 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 CHST13Q8NET6 341 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 SH3TC2Q8TF17 1288 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 MTMR8Q96EF0 704 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 KIF2CQ99661 725 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 ACAD9Q9H845 621 aa20.31■□□□□ 0.84
SHMT2-225ENST00000556798 STRNO43815 780 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 ADCY3O60266 1144 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 PPP1R11O60927 126 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-225ENST00000556798 PGK2P07205 417 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 CDC27P30260 824 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 GNAQP50148 359 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 NEK4P51957 841 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 TKFCQ3LXA3 575 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 NOL8Q76FK4 1167 aaKnown RBP20.3■□□□□ 0.84
SHMT2-225ENST00000556798 NPLOC4Q8TAT6 608 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 APBA2Q99767 749 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 LZTS2Q9BRK4 669 aa20.3■□□□□ 0.84
SHMT2-225ENST00000556798 SPZ1Q9BXG8 430 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms