RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	ARHGEF10L	Q9HCE6	1279 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	HCST	Q9UBK5	93 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	ZNF214	Q9UL59	606 aa	Predicted RBP	10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	FAM184B	Q9ULE4	1060 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	RIPK3	Q9Y572	518 aa		10.46	□□□□□ -0.73
SYNE2-222	ENST00000556725	GBF1	Q92538	1859 aa		10.46	□□□□□ -0.74
SYNE2-222	ENST00000556725	MYH8	P13535	1937 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	BAZ2A	Q9UIF9	1905 aa	Known RBP	10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ROBO3	Q96MS0	1386 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ZNF532	Q9HCE3	1301 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	TCRBV5S4A2T	A0A5A2	114 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	MOXD2P	A6NHM9	499 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ASGR1	P07306	291 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	CYP2C18	P33260	490 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	AACS	Q86V21	672 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	FAM122A	Q96E09	287 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ARMT1	Q9H993	441 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	CNPY2	Q9Y2B0	182 aa		10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	YBX2	Q9Y2T7	364 aa	Known RBP	10.45	□□□□□ -0.74
SYNE2-222	ENST00000556725	ELP1	O95163	1332 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	ARVCF	O00192	962 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	DUSP11	O75319	330 aa	Known RBP	10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	C6orf222	P0C671	652 aa	Predicted RBP	10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	BMP1	P13497	986 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	SLC4A3	P48751	1232 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	CDK8	P49336	464 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	TFF2	Q03403	129 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	FAM83B	Q5T0W9	1011 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	TMEM199	Q8N511	208 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	GLT1D1	Q96MS3	346 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	NUP88	Q99567	741 aa	Predicted RBP	10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	SWAP70	Q9UH65	585 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	PPP1R9A	Q9ULJ8	1098 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	EXOC6B	Q9Y2D4	811 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	BDP1	A6H8Y1	2624 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	TRANK1	O15050	2925 aa		10.44	□□□□□ -0.74
SYNE2-222	ENST00000556725	MCM3AP	O60318	1980 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	UMODL1	Q5DID0	1318 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	SYNGAP1	Q96PV0	1343 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	DNAJC25-GNG10	A0A024R161	153 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	APBB1	O00213	710 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	GOLIM4	O00461	696 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	STK25	O00506	426 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	CTAGE5	O15320	804 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	RAD21	O60216	631 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	CHGB	P05060	677 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	MYOG	P15173	224 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	RABGGTB	P53611	331 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	ACVR2B	Q13705	512 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	GNAS	Q5JWF2	1037 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	TMED8	Q6PL24	325 aa	Predicted RBP	10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	MAMDC4	Q6UXC1	1216 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	FAM126B	Q8IXS8	530 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	HS6ST3	Q8IZP7	471 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	HERVK_113	Q902F9	699 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	DDX11	Q96FC9	970 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	ZFP91	Q96JP5	570 aa	Predicted RBP	10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	FGD4	Q96M96	766 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	SH2D4A	Q9H788	454 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	IL1RAPL2	Q9NP60	686 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	IL23A	Q9NPF7	189 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	MSRA	Q9UJ68	235 aa		10.43	□□□□□ -0.74
SYNE2-222	ENST00000556725	MROH7	Q68CQ1	1323 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725		A0A0U1RQG5	324 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	USP17L12	C9JPN9	530 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	USP17L21	D6R901	530 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CD4	P01730	458 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	FGB	P02675	491 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CST5	P28325	142 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	GJA9	P57773	515 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	BEX3	Q00994	111 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	TTF1	Q15361	905 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CCDC144B	Q3MJ40	725 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	C12orf60	Q5U649	245 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	ZKSCAN2	Q63HK3	967 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	SNRNP48	Q6IEG0	339 aa	Known RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CCDC174	Q6PII3	467 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	OTOP2	Q7RTS6	562 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	MICALL1	Q8N3F8	863 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	BBX	Q8WY36	941 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CCDC17	Q96LX7	622 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	UPF3A	Q9H1J1	476 aa	Known RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	SLC28A3	Q9HAS3	691 aa		10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE2-222	ENST00000556725	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	RFXAP	O00287	272 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	MBD4	O95243	580 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	RLBP1	P12271	317 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	PTGS1	P23219	599 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	KCNQ1	P51787	676 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	CCL23	P55773	120 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	RAB30	Q15771	203 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	CEP85	Q6P2H3	762 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	C16orf86	Q6ZW13	317 aa		10.41	□□□□□ -0.74

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