RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 GPATCH4Q5T3I0 446 aaKnown RBP15.32■□□□□ 0.04
SHMT2-211ENST00000554310 SYDE2Q5VT97 1194 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 KIAA1211Q6ZU35 1233 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 MSL3Q8N5Y2 521 aaKnown RBP15.32■□□□□ 0.04
SHMT2-211ENST00000554310 PNMA1Q8ND90 353 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 MAP4K1Q92918 833 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 DDX11Q96FC9 970 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 ESYT1Q9BSJ8 1104 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 RANBP17Q9H2T7 1088 aaKnown RBP15.32■□□□□ 0.04
SHMT2-211ENST00000554310 ACAD9Q9H845 621 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 RNF146Q9NTX7 359 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 ZSWIM5Q9P217 1185 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 DDX20Q9UHI6 824 aaKnown RBP15.32■□□□□ 0.04
SHMT2-211ENST00000554310 NRBP1Q9UHY1 535 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 PNMA2Q9UL42 364 aa15.32■□□□□ 0.04
SHMT2-211ENST00000554310 DNAJC25-GNG10A0A024R161 153 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 ICAM1P05362 532 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 LHX8Q68G74 356 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 TTBK2Q6IQ55 1244 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 CCDC174Q6PII3 467 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 NECAB2Q7Z6G3 386 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 RALYLQ86SE5 291 aaKnown RBP15.31■□□□□ 0.04
SHMT2-211ENST00000554310 SKAP1Q86WV1 359 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 ANKRD35Q8N283 1001 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 TINF2Q9BSI4 451 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 HOMER2Q9NSB8 354 aa15.31■□□□□ 0.04
SHMT2-211ENST00000554310 PFASO15067 1338 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 CNGA1P29973 690 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 SLC16A2P36021 539 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 IFIT1BQ5T764 474 aaKnown RBP15.3■□□□□ 0.04
SHMT2-211ENST00000554310 CASC1Q6TDU7 716 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 ZNF467Q7Z7K2 595 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-211ENST00000554310 TRPV1Q8NER1 839 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 NCOA7Q8NI08 942 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 AGBL1Q96MI9 1066 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 LSG1Q9H089 658 aaKnown RBP15.3■□□□□ 0.04
SHMT2-211ENST00000554310 GPCPD1Q9NPB8 672 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 CCPG1Q9ULG6 757 aa15.3■□□□□ 0.04
SHMT2-211ENST00000554310 RBM8AQ9Y5S9 174 aaKnown RBP15.3■□□□□ 0.04
SHMT2-211ENST00000554310 ALPK3Q96L96 1907 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 WDR19Q8NEZ3 1342 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 SYNGAP1Q96PV0 1343 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 E7EWF7 191 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 SEPT4O43236 478 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 ALAS1P13196 640 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 ASPRV1Q53RT3 343 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 DIS3LQ8TF46 1054 aaKnown RBP15.29■□□□□ 0.04
SHMT2-211ENST00000554310 PAWRQ96IZ0 340 aaKnown RBP15.29■□□□□ 0.04
SHMT2-211ENST00000554310 TRERF1Q96PN7 1200 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 A1CFQ9NQ94 594 aaKnown RBP15.29■□□□□ 0.04
SHMT2-211ENST00000554310 CNPY2Q9Y2B0 182 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 MCM3APO60318 1980 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 LRRC37A2A6NM11 1700 aa15.29■□□□□ 0.04
SHMT2-211ENST00000554310 LCTP09848 1927 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 CDC45O75419 566 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 MNX1P50219 401 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-211ENST00000554310 SNAP25P60880 206 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 SART3Q15020 963 aaKnown RBP15.28■□□□□ 0.04
SHMT2-211ENST00000554310 SEC23AQ15436 765 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 MAMDC4Q6UXC1 1216 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 STOX1Q6ZVD7 989 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 CYB5R4Q7L1T6 521 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 ANO2Q9NQ90 1003 aa15.28■□□□□ 0.04
SHMT2-211ENST00000554310 SMCHD1A6NHR9 2005 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 MYH6P13533 1939 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 ERICH2A1L162 156 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 POTEB2H3BUK9 544 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 PARP1P09874 1014 aaKnown RBP15.27■□□□□ 0.04
SHMT2-211ENST00000554310 GOLGA8HP0CJ92 632 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 FAM133AQ8N9E0 248 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 DPF3Q92784 378 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 C11orf49Q9H6J7 331 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 TAF6LQ9Y6J9 622 aa15.27■□□□□ 0.04
SHMT2-211ENST00000554310 COL6A1P12109 1028 aa15.26■□□□□ 0.03
SHMT2-211ENST00000554310 MB21D2Q8IYB1 491 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-211ENST00000554310 FGD4Q96M96 766 aa15.26■□□□□ 0.03
SHMT2-211ENST00000554310 CYP39A1Q9NYL5 469 aa15.26■□□□□ 0.03
SHMT2-211ENST00000554310 DNM1LO00429 736 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 IFIT3O14879 490 aaKnown RBP15.25■□□□□ 0.03
SHMT2-211ENST00000554310 AKR1A1P14550 325 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 WTAPQ15007 396 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 MUM1L1Q5H9M0 696 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 PRAMEF19Q5SWL8 479 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 ARRDC4Q8NCT1 418 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 MTA3Q9BTC8 594 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-211ENST00000554310 NR2E3Q9Y5X4 410 aa15.25■□□□□ 0.03
SHMT2-211ENST00000554310 SLC27A2O14975 620 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 EVI5O60447 810 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 SNAI1O95863 264 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-211ENST00000554310 ZNF865P0CJ78 1059 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-211ENST00000554310 RARBP10826 455 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 ANTXR2P58335 489 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 CNTN2Q02246 1040 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 CDC37Q16543 378 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-211ENST00000554310 RNF20Q5VTR2 975 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 CREB3L3Q68CJ9 461 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 NSMFQ6X4W1 530 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 ARMCX2Q7L311 632 aa15.24■□□□□ 0.03
SHMT2-211ENST00000554310 ABHD16BQ9H3Z7 469 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms