RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 DAGLBQ8NCG7 672 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 KANSL2Q9H9L4 492 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 SLC1A4P43007 532 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 UBE2SQ16763 222 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 TMEM179Q6ZVK1 233 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 STAMQ92783 540 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 TIGD1Q96MW7 591 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 ZNF830Q96NB3 372 aaPredicted RBP14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 ANO10Q9NW15 660 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 MYH7BA7E2Y1 1941 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 ACTN4O43707 911 aaKnown RBP14.52□□□□□ -0.08
VIPAS39-206ENST00000553888 ZNF579Q8NAF0 562 aaKnown RBP14.52□□□□□ -0.08
VIPAS39-206ENST00000553888 AGBL3Q8NEM8 1001 aa14.52□□□□□ -0.08
VIPAS39-206ENST00000553888 UPF1Q92900 1129 aaKnown RBP eCLIP14.52□□□□□ -0.08
VIPAS39-206ENST00000553888 PCDHA5Q9Y5H7 936 aa14.52□□□□□ -0.08
VIPAS39-206ENST00000553888 PP2D1A8MPX8 630 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 MDM2Q00987 491 aaPredicted RBP14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 LETM2Q2VYF4 491 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 KIAA1755Q5JYT7 1200 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 ACER1Q8TDN7 264 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 FAM151AQ8WW52 585 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 MYOZ2Q9NPC6 264 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 NYAP2Q9P242 653 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 GJA3Q9Y6H8 435 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 ESPNB1AK53 854 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 F5H6K3 240 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 PTMAP06454 111 aaKnown RBP14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 SMARCA1P28370 1054 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 KLRC3Q07444 240 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 SAMD7Q7Z3H4 446 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 SECISBP2LQ93073 1101 aaKnown RBP14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 C6orf50Q9HD87 102 aa14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.52□□□□□ -0.09
VIPAS39-206ENST00000553888 NDUFB10O96000 172 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 BMP6P22004 513 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 AFMP43652 599 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 TRAPPC10P48553 1259 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 BBXQ8WY36 941 aaPredicted RBP14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 MKL1Q969V6 931 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 NLRP12P59046 1061 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 ZYXQ15942 572 aaKnown RBP14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 CEP57L1Q8IYX8 460 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 TBCKQ8TEA7 893 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 TUBE1Q9UJT0 475 aa14.51□□□□□ -0.09
VIPAS39-206ENST00000553888 PNMA6FA0A0J9YX94 578 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 ZRSR1Q15695 479 aaKnown RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 REXO1Q8N1G1 1221 aaKnown RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 FERMT2Q96AC1 680 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 ZBED3Q96IU2 234 aaPredicted RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 VPS33BQ9H267 617 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 CCNT1O60563 726 aaKnown RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 POSTNQ15063 836 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 QRICH1Q2TAL8 776 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 TBC1D10BQ4KMP7 808 aaPredicted RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 GPATCH4Q5T3I0 446 aaKnown RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 CCDC12Q8WUD4 166 aaPredicted RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 UIMC1Q96RL1 719 aa14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 GLIS2Q9BZE0 524 aaPredicted RBP14.5□□□□□ -0.09
VIPAS39-206ENST00000553888 EDIL3O43854 480 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 GMPSP49915 693 aaPredicted RBP14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 ADCY7P51828 1080 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 NONOQ15233 471 aaKnown RBP eCLIP14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 GALNT17Q6IS24 598 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 FAM43AQ8N2R8 423 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 PLIN2Q99541 437 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 CD2APQ9Y5K6 639 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 COL2A1P02458 1487 aaPredicted RBP14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 ATAD5Q96QE3 1844 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 BECN2A8MW95 431 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 ZBTB5O15062 677 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 GNA11P29992 359 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 IKQ13123 557 aaPredicted RBP14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 TRIM5Q9C035 493 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 ZNF541Q9H0D2 1346 aa14.49□□□□□ -0.09
VIPAS39-206ENST00000553888 GOLGA6L19H0YKK7 550 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 BMP15O95972 392 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 CDC37Q16543 378 aaPredicted RBP14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 MICALL2Q8IY33 904 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 PGAP2Q9UHJ9 254 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 HERC5Q9UII4 1024 aaKnown RBP14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 MAN1B1Q9UKM7 699 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 TMEM232C9JQI7 657 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 KARSQ15046 597 aaKnown RBP14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 KRT25Q7Z3Z0 450 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 MTMR8Q96EF0 704 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 TTC12Q9H892 705 aaPredicted RBP14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 ZBTB21Q9ULJ3 1066 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L15C9J2P7 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L13C9JLJ4 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L11C9JVI0 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L18D6R9N7 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L22D6RA61 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L17D6RBQ6 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L19D6RCP7 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L20D6RJB6 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 TDP2O95551 362 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 TNNI2P48788 182 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USP17L24Q0WX57 530 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 RASA3Q14644 834 aa14.48□□□□□ -0.09
VIPAS39-206ENST00000553888 USH1GQ495M9 461 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms