RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 COL9A3Q14050 684 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-208ENST00000553868 ANO1Q5XXA6 986 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 SYNE3Q6ZMZ3 975 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 NFXL1Q6ZNB6 911 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 TRPV1Q8NER1 839 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 SLKQ9H2G2 1235 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-208ENST00000553868 INCENPQ9NQS7 918 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 PI4KBQ9UBF8 816 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 RBPJLQ9UBG7 517 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 SERPINB13Q9UIV8 391 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 TACC3Q9Y6A5 838 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 CHD9Q3L8U1 2897 aa16.87■□□□□ 0.29
SHMT2-208ENST00000553868 CCDC69A6NI79 296 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 PRDM1O75626 825 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 MYCNP04198 464 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 PBX2P40425 430 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 CDK8P49336 464 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 IRX3P78415 501 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 APOBRQ0VD83 1088 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 RRP1BQ14684 758 aaKnown RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 WTAPQ15007 396 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 ME3Q16798 604 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 FOXP4Q8IVH2 680 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 CRACR2BQ8N4Y2 399 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 SPRYD3Q8NCJ5 442 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 IGDCC4Q8TDY8 1250 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 CIZ1Q9ULV3 898 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 NAP1L2Q9ULW6 460 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-208ENST00000553868 ATAD5Q96QE3 1844 aa16.86■□□□□ 0.29
SHMT2-208ENST00000553868 PLXNA1Q9UIW2 1896 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 KLF18A0A0U1RQI7 1052 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-208ENST00000553868 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-208ENST00000553868 DHX16O60231 1041 aaKnown RBP16.85■□□□□ 0.29
SHMT2-208ENST00000553868 BMP1P13497 986 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 MAPK4P31152 587 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 HERVK_113P62684 666 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 TFF2Q03403 129 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 PLEKHH3Q7Z736 793 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 SGMS1Q86VZ5 419 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 FERMT2Q96AC1 680 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 DYNLL2Q96FJ2 89 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 ZSCAN10Q96SZ4 725 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-208ENST00000553868 LARP6Q9BRS8 491 aaKnown RBP16.85■□□□□ 0.29
SHMT2-208ENST00000553868 PAGR1Q9BTK6 254 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 MYH1P12882 1939 aa16.85■□□□□ 0.29
SHMT2-208ENST00000553868 FAM86C2PA6NEL3 165 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 GOLGA8BA8MQT2 603 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 GRXCR1A8MXD5 290 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 SMIM22K7EJ46 135 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 PFKFB2O60825 505 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 TSPY3P0CV98 308 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 TSPY8P0CW00 308 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 IGFBP4P22692 258 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 CYP2C19P33261 490 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 RCAN1P53805 252 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 ERVK-9P63128 1117 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 ERVK-24P63145 666 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 TFAP4Q01664 338 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 GABPAQ06546 454 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 MAP2K5Q13163 448 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 SNX17Q15036 470 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 PPP4R3BQ5MIZ7 849 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 MFSD14CQ5VZR4 134 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 CCDC83Q8IWF9 413 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 CCAR1Q8IX12 1150 aaKnown RBP16.84■□□□□ 0.29
SHMT2-208ENST00000553868 GTF3C6Q969F1 213 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 CCDC17Q96LX7 622 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 LY9Q9HBG7 655 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 SLC12A7Q9Y666 1083 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 TNKSO95271 1327 aa16.84■□□□□ 0.29
SHMT2-208ENST00000553868 LARGE1O95461 756 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 RASA1P20936 1047 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 PDIA3P30101 505 aaKnown RBP16.83■□□□□ 0.28
SHMT2-208ENST00000553868 KCNQ1P51787 676 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 TLE2Q04725 743 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 MTMR2Q13614 643 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 SH3D19Q5HYK7 790 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 TMEM31Q5JXX7 168 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 LLPHQ9BRT6 129 aaKnown RBP16.83■□□□□ 0.28
SHMT2-208ENST00000553868 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.83■□□□□ 0.28
SHMT2-208ENST00000553868 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 TCP11L1Q9NUJ3 509 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 CHMP5Q9NZZ3 219 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 HERC5Q9UII4 1024 aaKnown RBP16.83■□□□□ 0.28
SHMT2-208ENST00000553868 SMC3Q9UQE7 1217 aa16.83■□□□□ 0.28
SHMT2-208ENST00000553868 ZBTB43O43298 467 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 CALM1P0DP23 149 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 CALM2P0DP24 149 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 CALM3P0DP25 149 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 ADCYAP1R1P41586 468 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 EVX2Q03828 476 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 STK3Q13188 491 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 FAM47AQ5JRC9 791 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 IFIT1BQ5T764 474 aaKnown RBP16.82■□□□□ 0.28
SHMT2-208ENST00000553868 CPLX2Q6PUV4 134 aaKnown RBP16.82■□□□□ 0.28
SHMT2-208ENST00000553868 DGKHQ86XP1 1220 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 SLC44A5Q8NCS7 719 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 NEDD1Q8NHV4 660 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 ZKSCAN3Q9BRR0 538 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms