RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 TMEM199Q8N511 208 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 KIFC2Q96AC6 838 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 KATNBL1Q9H079 304 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 ABHD16BQ9H3Z7 469 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 SPC25Q9HBM1 224 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 SLC38A10Q9HBR0 1119 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 CXXC1Q9P0U4 656 aaPredicted RBP10.88□□□□□ -0.67
SYNE2-209ENST00000553308 THEGQ9P2T0 379 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 RAPGEFL1Q9UHV5 662 aa10.88□□□□□ -0.67
SYNE2-209ENST00000553308 ASTN1O14525 1302 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 UMODL1Q5DID0 1318 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 GBF1Q92538 1859 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 IGKV6D-41A0A0C4DH26 115 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 GSG1L2A8MUP6 293 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 TLR3O15455 904 aaKnown RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 ZBED4O75132 1171 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CD4P01730 458 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 PTGS1P23219 599 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CNTN2Q02246 1040 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CCDC85BQ15834 202 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 SBK1Q52WX2 424 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CCDC144CPQ8IYA2 1237 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 LRRC47Q8N1G4 583 aaKnown RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 ADAMTS19Q8TE59 1207 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 ATXN2LQ8WWM7 1075 aaKnown RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 ASB2Q96Q27 587 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 STRBPQ96SI9 672 aaKnown RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 NKX2-4Q9H2Z4 354 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 MKNK2Q9HBH9 465 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 HOMER2Q9NSB8 354 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 ZBTB40Q9NUA8 1239 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CLIP2Q9UDT6 1046 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 YBX2Q9Y2T7 364 aaKnown RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 COG6Q9Y2V7 657 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 CTDP1Q9Y5B0 961 aaPredicted RBP10.87□□□□□ -0.67
SYNE2-209ENST00000553308 TTC28Q96AY4 2481 aa10.87□□□□□ -0.67
SYNE2-209ENST00000553308 MINDY4BA8MYZ0 360 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 PRDM1O75626 825 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 IGFBP4P22692 258 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 RAB30Q15771 203 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 ZSCAN25Q6NSZ9 544 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 CXCL17Q6UXB2 119 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 CHST13Q8NET6 341 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 HERVK_113Q902F9 699 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 CEP95Q96GE4 821 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 HIPK3Q9H422 1215 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 EPB41L4AQ9HCS5 686 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-209ENST00000553308 IL23AQ9NPF7 189 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 FBXO40Q9UH90 709 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 MSRAQ9UJ68 235 aa10.86□□□□□ -0.67
SYNE2-209ENST00000553308 DDX49Q9Y6V7 483 aaKnown RBP10.86□□□□□ -0.67
SYNE2-209ENST00000553308 SMARCA5O60264 1052 aaPredicted RBP10.85□□□□□ -0.67
SYNE2-209ENST00000553308 OAZ1P54368 228 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 NKX3-2P78367 333 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 TNFAIP2Q03169 654 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 GIMAP6Q6P9H5 292 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 NOL8Q76FK4 1167 aaKnown RBP10.85□□□□□ -0.67
SYNE2-209ENST00000553308 OTOP2Q7RTS6 562 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 TLK2Q86UE8 772 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 FAM133AQ8N9E0 248 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 SLC43A3Q8NBI5 491 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 OSBP2Q969R2 916 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 MTMR4Q9NYA4 1195 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 FEM1BQ9UK73 627 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 DDX19BQ9UMR2 479 aa10.85□□□□□ -0.67
SYNE2-209ENST00000553308 GRIN2DO15399 1336 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 SOWAHBA6NEL2 793 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 FGBP02675 491 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 RABGGTBP53611 331 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 CCL23P55773 120 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 MRPS5P82675 430 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 GMCL1P1Q8NEA9 526 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 APPBP2Q92624 585 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 MKL1Q969V6 931 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 CHMP4CQ96CF2 233 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 UHRF1Q96T88 793 aaPredicted RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 NOC4LQ9BVI4 516 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 WNT8AQ9H1J5 351 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 MTIF3Q9H2K0 278 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 ACAD9Q9H845 621 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 SLC28A3Q9HAS3 691 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 A1CFQ9NQ94 594 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 RNF146Q9NTX7 359 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 ISY1Q9ULR0 285 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 GNEQ9Y223 722 aaKnown RBP10.84□□□□□ -0.67
SYNE2-209ENST00000553308 ZNF536O15090 1300 aa10.84□□□□□ -0.67
SYNE2-209ENST00000553308 PLIN4Q96Q06 1357 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 TMEM232C9JQI7 657 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 M0R2C6 588 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 GPAA1O43292 621 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 B4GALT4O60513 344 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 TTLL1O95922 423 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 MS4A1P11836 297 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 BMP3P12645 472 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 MYOGP15173 224 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 SMPD1P17405 629 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 TDO2P48775 406 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 PSMC6P62333 389 aa10.83□□□□□ -0.68
SYNE2-209ENST00000553308 ITGA7Q13683 1181 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms