RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MLKLQ8NB16 471 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC150Q8NCX0 1101 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CERKQ8TCT0 537 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CRACR2AQ9BSW2 395 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 DACH1Q9UI36 760 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 DDTLA6NHG4 134 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SORBS3O60504 671 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SLC1A4P43007 532 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CYP4A11Q02928 519 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PDE4CQ08493 712 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 NCBP1Q09161 790 aaKnown RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PLS1Q14651 629 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 KMT5BQ4FZB7 885 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GLIPR1L2Q4G1C9 344 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SPECC1LQ69YQ0 1117 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC174Q6PII3 467 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 MAEAQ7L5Y9 396 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 DEFB132Q7Z7B7 95 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 DGKHQ86XP1 1220 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 REXO1Q8N1G1 1221 aaKnown RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 WDR24Q96S15 920 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PSMB7Q99436 277 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 MMRN2Q9H8L6 949 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SERPINB13Q9UIV8 391 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 ZHX1Q9UKY1 873 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GUCA1BQ9UMX6 200 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SHANK3Q9BYB0 1731 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 NPHP3-ACAD11A0A0J9YXS1 232 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 STXBP3O00186 592 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PPIP5K2O43314 1243 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 NEMFO60524 1076 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 KRT9P35527 623 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GNAQP50148 359 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 FXR1P51114 621 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 ATP2C1P98194 919 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PAK1Q13153 545 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PRKG1Q13976 671 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GRM4Q14833 912 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 KRT31Q15323 416 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SKIDA1Q1XH10 827 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 ZNF569Q5MCW4 686 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 KANK3Q6NY19 840 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 CDAN1Q8IWY9 1227 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 ANKRD13CQ8N6S4 541 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GLIS3Q8NEA6 775 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SNX29Q8TEQ0 813 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 FERMT2Q96AC1 680 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 SH2D3AQ9BRG2 576 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 TRIM10Q9UDY6 481 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 LRWD1Q9UFC0 647 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 PPP2R2CQ9Y2T4 447 aa6.3□□□□□ -1.4
LIMA1-215ENST00000552823 GPR75-ASB3A0A0A6YYF3 556 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 B4DLN1 442 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 PPP1R3GB7ZBB8 358 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 AKR1B15C9JRZ8 316 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 DDX39AO00148 427 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ENC1O14682 589 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 IKBKBO14920 756 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SLC37A4O43826 429 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ECM2O94769 699 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SEC31AO94979 1220 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 HLA-DOAP06340 250 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ZNF76P36508 570 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 STK4Q13043 487 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 KIF4BQ2VIQ3 1234 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ARHGAP29Q52LW3 1261 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SBK1Q52WX2 424 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC155Q8N6L0 562 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ANKRD20A12PQ8NF67 263 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC148Q8NFR7 591 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 LRRC15Q8TF66 581 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 TEKT1Q969V4 418 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CHP1Q99653 195 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ZNF287Q9HBT7 754 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ST7Q9NRC1 585 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 EXOC1Q9NV70 894 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 MAGEC2Q9UBF1 373 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ATRNO75882 1429 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SFI1A8K8P3 1242 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 KCNJ18B7U540 433 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 H0YIN7 160 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 POLR3GO15318 223 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 PHLPP1O60346 1717 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 TPM1P09493 284 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 PDHBP11177 359 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CASQ1P31415 396 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CRKP46108 304 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 NAP1L1P55209 391 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CYP27A1Q02318 531 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 KCNJ12Q14500 433 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 EZH2Q15910 746 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CALCRLQ16602 461 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 PRAMEF18Q5VWM3 479 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 SPATA1Q5VX52 437 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 TICAM2Q86XR7 235 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ADGRF4Q8IZF3 695 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 CSGALNACT2Q8N6G5 542 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 NEDD1Q8NHV4 660 aa6.29□□□□□ -1.4
LIMA1-215ENST00000552823 ENOX1Q8TC92 643 aaKnown RBP6.29□□□□□ -1.4
LIMA1-215ENST00000552823 UBXN4Q92575 508 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms