RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CYP26C1Q6V0L0 522 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 HEATR3Q7Z4Q2 680 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 DZIP1Q86YF9 867 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 ADSSL1Q8N142 457 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 SH3RF3Q8TEJ3 882 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 HPS3Q969F9 1004 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC51Q96ER9 411 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 NAPGQ99747 312 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 ABCB6Q9NP58 842 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 TTF2Q9UNY4 1162 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC194A0A1B0GVG4 234 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 NUTM2BA6NNL0 878 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 NUTM2EB1AL46 878 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 ATP8B1O43520 1251 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 SRGAP2O75044 1071 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 USP5P45974 858 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 HNRNPH2P55795 449 aaKnown RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 SBK1Q52WX2 424 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 BEND6Q5SZJ8 279 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 C12orf60Q5U649 245 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 ARL6IP4Q66PJ3 421 aaKnown RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 WDR59Q6PJI9 974 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 CLEC4GQ6UXB4 293 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 DTHD1Q6ZMT9 781 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 GPIHBP1Q8IV16 184 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 MB21D1Q8N884 522 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 PDE11AQ9HCR9 933 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 AGPAT5Q9NUQ2 364 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 SAP30BPQ9UHR5 308 aaKnown RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 STX8Q9UNK0 236 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 EPN1Q9Y6I3 576 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 B4DLN1 442 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 MAP2K7O14733 419 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 NDUFA10O95299 355 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 KIF5BP33176 963 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 HERVK_113P62684 666 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 AMPD2Q01433 879 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 CEP112Q8N8E3 955 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 TRIM47Q96LD4 638 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 RMND1Q9NWS8 449 aa8.43□□□□□ -1.06
LIMA1-213ENST00000552720 MKRN1Q9UHC7 482 aaKnown RBP8.43□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC66A2RUB6 948 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 RCCD1A6NED2 376 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 RASSF10A6NK89 507 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 STXBP3O00186 592 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 CALML3P27482 149 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 UBA7P41226 1012 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 SPAG1Q07617 926 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 GRM4Q14833 912 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 BRD3Q15059 726 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 JAKMIP3Q5VZ66 844 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 NBPF5PQ86XG9 351 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-213ENST00000552720 MSANTD4Q8NCY6 345 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 ANKRD20A12PQ8NF67 263 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 ZNF507Q8TCN5 953 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 TGFBRAP1Q8WUH2 860 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 NLRP3Q96P20 1036 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 MKNK2Q9HBH9 465 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 DDX60LQ5H9U9 1706 aaKnown RBP8.42□□□□□ -1.06
LIMA1-213ENST00000552720 LGALS16A8MUM7 142 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 H7C1D1 291 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 ATP1A1P05023 1023 aaKnown RBP8.42□□□□□ -1.06
LIMA1-213ENST00000552720 TSPY3P0CV98 308 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 TSPY8P0CW00 308 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 FCER1AP12319 257 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 PLCG1P19174 1290 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 STK4Q13043 487 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 TXNRD1Q16881 649 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 SLC10A5Q5PT55 438 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 TTI2Q6NXR4 508 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 MAPKAPK5Q8IW41 473 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 RNF25Q96BH1 459 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-213ENST00000552720 DUSP9Q99956 384 aaKnown RBP8.42□□□□□ -1.06
LIMA1-213ENST00000552720 RAB21Q9UL25 225 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 MYO6Q9UM54 1294 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 DUSP10Q9Y6W6 482 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 FLT1P17948 1338 aa8.42□□□□□ -1.06
LIMA1-213ENST00000552720 COL24A1Q17RW2 1714 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CTAGE15A4D2H0 777 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CTAGE8P0CG41 777 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 TM4SF1P30408 202 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 NFIXQ14938 502 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 LETM2Q2VYF4 491 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC178Q5BJE1 867 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CTAGE6Q86UF2 777 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 DGKHQ86XP1 1220 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CTAGE4Q8IX94 777 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 GIMAP8Q8ND71 665 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-213ENST00000552720 OR8K1Q8NGG5 319 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CAPZA3Q96KX2 299 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 SETDB2Q96T68 719 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 HINFPQ9BQA5 517 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 TMEM47Q9BQJ4 181 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CDCA7Q9BWT1 371 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-213ENST00000552720 KBTBD4Q9NVX7 518 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 ADAM21Q9UKJ8 722 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 L1RE1Q9UN81 338 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 LUC7L2Q9Y383 392 aaKnown RBP8.41□□□□□ -1.06
LIMA1-213ENST00000552720 PDS5AQ29RF7 1337 aaKnown RBP8.41□□□□□ -1.06
LIMA1-213ENST00000552720 IRS2Q9Y4H2 1338 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms