RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 SH3D21A4FU49 640 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 F6X3S4 739 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PLA2G1BP04054 148 aaKnown RBP3.49□□□□□ -1.85
LIMA1-209ENST00000552008 CLEC16AQ2KHT3 1053 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF394Q53GI3 561 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 NAALADL2Q58DX5 795 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 SNAP47Q5SQN1 464 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PCNX4Q63HM2 1172 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 TTBK2Q6IQ55 1244 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 RNF111Q6ZNA4 994 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 SAPCD2Q86UD0 394 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF526Q8TF50 670 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-209ENST00000552008 GAL3ST3Q96A11 431 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 HHIPL1Q96JK4 782 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PRDM14Q9GZV8 571 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 IGSF5Q9NSI5 407 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 KBTBD4Q9NVX7 518 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PPP1R1BQ9UD71 204 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-209ENST00000552008 ING1Q9UK53 422 aaPredicted RBP3.49□□□□□ -1.85
LIMA1-209ENST00000552008 TSC22D4Q9Y3Q8 395 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PCDHGB7Q9Y5F8 929 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 HS3ST3A1Q9Y663 406 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PMF1-BGLAPU3KQ54 211 aa3.49□□□□□ -1.85
LIMA1-209ENST00000552008 PLATP00750 562 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 PGRP06401 933 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 CELA3AP09093 270 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 EIF4A3P38919 411 aaKnown RBP3.48□□□□□ -1.85
LIMA1-209ENST00000552008 LIG3P49916 1009 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 RTP1P59025 263 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 LAPTM5Q13571 262 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 SF3A1Q15459 793 aaKnown RBP3.48□□□□□ -1.85
LIMA1-209ENST00000552008 SMN1Q16637 294 aaKnown RBP3.48□□□□□ -1.85
LIMA1-209ENST00000552008 LDLRAD1Q5T700 205 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 METTL16Q86W50 562 aaKnown RBP3.48□□□□□ -1.85
LIMA1-209ENST00000552008 RNF141Q8WVD5 230 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 SPON2Q9BUD6 331 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 RSRP1Q9BUV0 290 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 MIR1-1HGQ9H1L0 117 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 ACBD3Q9H3P7 528 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 ST6GALNAC2Q9UJ37 374 aa3.48□□□□□ -1.85
LIMA1-209ENST00000552008 BPNT1O95861 308 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 DNAJA1P31689 397 aaKnown RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 ZNF200P98182 395 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 FAM160A1Q05DH4 1040 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 CBX2Q14781 532 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 KIR3DS1Q14943 382 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 CDSNQ15517 529 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TARBP2Q15633 366 aaKnown RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 PLEKHN1Q494U1 663 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TBC1D10BQ4KMP7 808 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 GALNT18Q6P9A2 607 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 RPTNQ6XPR3 784 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 ERMP1Q7Z2K6 904 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 KIAA0825Q8IV33 1275 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 CARFQ8N187 725 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 ANKRD24Q8TF21 1146 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 JARID2Q92833 1246 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 NAF1Q96HR8 494 aaKnown RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TMEM74Q96NL1 305 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 C8orf37Q96NL8 207 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 COPRSQ9NQ92 184 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 DDX41Q9UJV9 622 aaKnown RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TLR6Q9Y2C9 796 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 SUPT16HQ9Y5B9 1047 aaKnown RBP3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TNFRSF18Q9Y5U5 241 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 TAF6LQ9Y6J9 622 aa3.47□□□□□ -1.85
LIMA1-209ENST00000552008 GFRA2O00451 464 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 PF4P02776 101 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 AMHP03971 560 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 TNNI2P48788 182 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 TGFB2P61812 414 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 RPS26P62854 115 aaKnown RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 RACK1P63244 317 aaKnown RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 HTRA3P83110 453 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 FOXO4P98177 505 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 RAD51AP2Q09MP3 1159 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 CAMK2GQ13555 558 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 HSF5Q4G112 596 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 ZC3H14Q6PJT7 736 aaKnown RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 MCATQ8IVS2 390 aaKnown RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 USHBP1Q8N6Y0 703 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 GOLM1Q8NBJ4 401 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 CYB5D2Q8WUJ1 264 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 ZNF296Q8WUU4 475 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-209ENST00000552008 CPLX3Q8WVH0 158 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 SPATA32Q96LK8 384 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 DRC1Q96MC2 740 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 FOXP3Q9BZS1 431 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 TANGO6Q9C0B7 1094 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 TNFRSF12AQ9NP84 129 aa3.46□□□□□ -1.86
LIMA1-209ENST00000552008 TMEM82A0PJX8 343 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 WTIPA6NIX2 430 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-209ENST00000552008 SSBP05455 408 aaKnown RBP eCLIP3.45□□□□□ -1.86
LIMA1-209ENST00000552008 PRKCAP17252 672 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 ATP2B1P20020 1258 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 MCM4P33991 863 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 MAPKAPK2P49137 400 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 INHBEP58166 350 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 CYP4F8P98187 520 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 LMNB2Q03252 620 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms