RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 NOVP48745 357 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 C16orf86Q6ZW13 317 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 PPFIBP1Q86W92 1011 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 TMEM139Q8IV31 216 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 CNKSR1Q969H4 720 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 NUP88Q99567 741 aaPredicted RBP12.52□□□□□ -0.41
LINC00661-204ENST00000549354 TRIM34Q9BYJ4 488 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 IL17RBQ9NRM6 502 aa12.52□□□□□ -0.41
LINC00661-204ENST00000549354 FLT1P17948 1338 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 EFCAB8A8MWE9 144 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 MMP1P03956 469 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 RRAGBQ5VZM2 374 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 HHIPL2Q6UWX4 724 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 AMOTL1Q8IY63 956 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 FBXO41Q8TF61 875 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 MED15Q96RN5 788 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 SLF1Q9BQI6 1058 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 TMX4Q9H1E5 349 aaPredicted RBP12.51□□□□□ -0.41
LINC00661-204ENST00000549354 GUCA1BQ9UMX6 200 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 STX8Q9UNK0 236 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 HPSEQ9Y251 543 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 C10orf71Q711Q0 1435 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 PHLPP2Q6ZVD8 1323 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 RIMBP2O15034 1052 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 N4BP3O15049 544 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 N4BP1O75113 896 aaKnown RBP12.51□□□□□ -0.41
LINC00661-204ENST00000549354 ZRANB2O95218 330 aaKnown RBP eCLIP12.51□□□□□ -0.41
LINC00661-204ENST00000549354 RBL2Q08999 1139 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 PKN1Q16512 942 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 CC2D2BQ6DHV5 1058 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 TMTC3Q6ZXV5 915 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 TEX11Q8IYF3 940 aa12.51□□□□□ -0.41
LINC00661-204ENST00000549354 FOXP1Q9H334 677 aaPredicted RBP12.51□□□□□ -0.41
LINC00661-204ENST00000549354 A0A087X0B3 334 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 TRIM49BA6NDI0 452 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 CASP14P31944 242 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 PLCD1P51178 756 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 EIF6P56537 245 aaKnown RBP12.5□□□□□ -0.41
LINC00661-204ENST00000549354 IGSF22Q8N9C0 903 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 SYMPKQ92797 1274 aaKnown RBP12.5□□□□□ -0.41
LINC00661-204ENST00000549354 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.5□□□□□ -0.41
LINC00661-204ENST00000549354 CALCOCO1Q9P1Z2 691 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 MYH1P12882 1939 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 CCP110O43303 1012 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 CAPN2P17655 700 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 RASA1P20936 1047 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 NLRP5P59047 1200 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 HPS3Q969F9 1004 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 ZNF287Q9HBT7 754 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 VPS18Q9P253 973 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 SAP30BPQ9UHR5 308 aaKnown RBP12.5□□□□□ -0.41
LINC00661-204ENST00000549354 CUTAO60888 179 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 TFAP4Q01664 338 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 RAD9BQ6WBX8 426 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 MAPKAPK5Q8IW41 473 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 C10orf67Q8IYJ2 551 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 ZNF622Q969S3 477 aaKnown RBP eCLIP12.5□□□□□ -0.41
LINC00661-204ENST00000549354 DYNLL2Q96FJ2 89 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 PDE11AQ9HCR9 933 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 FAM53CQ9NYF3 392 aa12.5□□□□□ -0.41
LINC00661-204ENST00000549354 TSPY2A6NKD2 308 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 ATP2B2Q01814 1243 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 GRIPAP1Q4V328 841 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 CCDC102AQ96A19 550 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.49□□□□□ -0.41
LINC00661-204ENST00000549354 H3BQF6 201 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 TRIM66O15016 1216 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 SRGAP2O75044 1071 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
LINC00661-204ENST00000549354 HDLBPQ00341 1268 aaKnown RBP12.49□□□□□ -0.41
LINC00661-204ENST00000549354 LONRF2Q1L5Z9 754 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 TRMT1LQ7Z2T5 733 aaKnown RBP12.49□□□□□ -0.41
LINC00661-204ENST00000549354 GDAQ9Y2T3 454 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 PLIN4Q96Q06 1357 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 KIF13BQ9NQT8 1826 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 MYH6P13533 1939 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 PPP6R2O75170 966 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 STRIP1Q5VSL9 837 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 TAF3Q5VWG9 929 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 SLC44A5Q8NCS7 719 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 SHISA4Q96DD7 197 aa12.49□□□□□ -0.41
LINC00661-204ENST00000549354 SRRTQ9BXP5 876 aaKnown RBP12.49□□□□□ -0.41
LINC00661-204ENST00000549354 CNTNAP5Q8WYK1 1306 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 FAM237AA0A1B0GTK4 181 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 CDK8P49336 464 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 CHMP4BP1P59074 171 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 RNASE9P60153 205 aaKnown RBP12.48□□□□□ -0.41
LINC00661-204ENST00000549354 MAP3K9P80192 1104 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 GABPAQ06546 454 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 PTGDRQ13258 359 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 DNAJC21Q5F1R6 531 aaKnown RBP12.48□□□□□ -0.41
LINC00661-204ENST00000549354 GSPT2Q8IYD1 628 aaKnown RBP12.48□□□□□ -0.41
LINC00661-204ENST00000549354 NEDD1Q8NHV4 660 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 PHF20Q9BVI0 1012 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 MRFAP1Q9Y605 127 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 CCDC175P0C221 793 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 TNNT3P45378 269 aaPredicted RBP12.48□□□□□ -0.41
LINC00661-204ENST00000549354 RAD51AP2Q09MP3 1159 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 DOK7Q18PE1 504 aa12.48□□□□□ -0.41
LINC00661-204ENST00000549354 SLC16A10Q8TF71 515 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms