RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 RBPJLQ9UBG7 517 aa8.43□□□□□ -1.06
DEPDC4-208ENST00000549341 IVNS1ABPQ9Y6Y0 642 aa8.43□□□□□ -1.06
DEPDC4-208ENST00000549341 SALL1Q9NSC2 1324 aa8.43□□□□□ -1.06
DEPDC4-208ENST00000549341 CHD9Q3L8U1 2897 aa8.43□□□□□ -1.06
DEPDC4-208ENST00000549341 AK9Q5TCS8 1911 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 MAP4K4O95819 1239 aaPredicted RBP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 AVPP01185 164 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 ZFYP08048 801 aaPredicted RBP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 CYBAP13498 195 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 RAG1P15918 1043 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 ITGB8P26012 769 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 RHBDL3P58872 404 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 ANAPC15P60006 121 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 TIMM10P62072 90 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 CCNA1P78396 465 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 MECOMQ03112 1051 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 TLE2Q04725 743 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 FPGSQ05932 587 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 FOXC1Q12948 553 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 ARRDC4Q8NCT1 418 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 GTF3C2Q8WUA4 911 aaPredicted RBP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 XAGE2Q96GT9 111 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 ZNF512BQ96KM6 892 aaPredicted RBP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 DNAJC2Q99543 621 aaKnown RBP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 C1QTNF1Q9BXJ1 281 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 USP26Q9BXU7 913 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 PKD2L1Q9P0L9 805 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 LOC285556D6RIA3 1793 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 MUC6Q6W4X9 2439 aa8.42□□□□□ -1.06
DEPDC4-208ENST00000549341 SEMA3EO15041 775 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 AXIN1O15169 862 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 SGSM2O43147 1006 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 WIPF1O43516 503 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 CLTBP09497 229 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 HOXA7P31268 230 aaPredicted RBP8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 RPIAP49247 311 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 MCM2P49736 904 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 FAM47AQ5JRC9 791 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 RNF20Q5VTR2 975 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 CWC27Q6UX04 472 aaKnown RBP8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 TEX11Q8IYF3 940 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 CRACR2BQ8N4Y2 399 aaPredicted RBP8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 KBTBD3Q8NAB2 608 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 NPLOC4Q8TAT6 608 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 WDR18Q9BV38 432 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 PAG1Q9NWQ8 432 aa8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 TLR7Q9NYK1 1049 aaKnown RBP8.41□□□□□ -1.06
DEPDC4-208ENST00000549341 LTBP2Q14767 1821 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 SLC15A5A6NIM6 579 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 GRXCR1A8MXD5 290 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 USP17L10C9JJH3 530 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 CNMDO75829 334 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 CD2BP2O95400 341 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 ASNSP08243 561 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 JAG1P78504 1218 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 GRB14Q14449 540 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 SNX17Q15036 470 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 SKIV2LQ15477 1246 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 PLA2G2CQ5R387 149 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 SPTY2D1Q68D10 685 aaPredicted RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 CCDC102BQ68D86 513 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 SNX21Q969T3 373 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 HELLSQ9NRZ9 838 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 TMEM39AQ9NV64 488 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 RAI14Q9P0K7 980 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 HERC5Q9UII4 1024 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 ZBTB21Q9ULJ3 1066 aa8.4□□□□□ -1.06
DEPDC4-208ENST00000549341 DOCK3Q8IZD9 2030 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 CACNA1AO00555 2505 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 PTPRFP10586 1907 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 PLXNB2O15031 1838 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 PHIPQ8WWQ0 1821 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 GPR75-ASB3A0A0A6YYF3 556 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 RCCD1A6NED2 376 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 FAM86C2PA6NEL3 165 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 GOLIM4O00461 696 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 HSP90AA1P07900 732 aaKnown RBP8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 ADORA2AP29274 412 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 TFF2Q03403 129 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 ADGRE1Q14246 886 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 LRRC41Q15345 812 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 MCMDC2Q4G0Z9 681 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 AKNAD1Q5T1N1 836 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 PI16Q6UXB8 463 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 DPP9Q86TI2 863 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 MAPKAPK5Q8IW41 473 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 SCUBE3Q8IX30 993 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 SH3RF3Q8TEJ3 882 aaPredicted RBP8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 PBX4Q9BYU1 374 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 DNAJC18Q9H819 358 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 RABGAP1Q9Y3P9 1069 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 ADGRG1Q9Y653 693 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 TACC3Q9Y6A5 838 aa8.39□□□□□ -1.07
DEPDC4-208ENST00000549341 CHD7Q9P2D1 2997 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 SYNGAP1Q96PV0 1343 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 C19orf81C9J6K1 198 aa8.38□□□□□ -1.07
DEPDC4-208ENST00000549341 SEPT4O43236 478 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms