RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ROBO2Q9HCK4 1378 aa6.3□□□□□ -1.4
VPS29-205ENST00000548539 ABLIM1O14639 778 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 NRDCO43847 1150 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 RPL10P27635 214 aaKnown RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 CDR1P51861 262 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 YBX1P67809 324 aaKnown RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 RPL6Q02878 288 aaKnown RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 CLCQ05315 142 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 DIEXFQ68CQ4 756 aaKnown RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 TMEFF1Q8IYR6 380 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 FAM13CQ8NE31 585 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 ARMC5Q96C12 935 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 FERD3LQ96RJ6 166 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 SRRTQ9BXP5 876 aaKnown RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 MYRFQ9Y2G1 1151 aa6.29□□□□□ -1.4
VPS29-205ENST00000548539 POLR3KQ9Y2Y1 108 aaPredicted RBP6.29□□□□□ -1.4
VPS29-205ENST00000548539 SHISA3A0PJX4 238 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 EFEMP2O95967 443 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 SDHBP21912 280 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 ZNF165P49910 485 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 YARSP54577 528 aaKnown RBP6.28□□□□□ -1.4
VPS29-205ENST00000548539 COL9A2Q14055 689 aaPredicted RBP6.28□□□□□ -1.4
VPS29-205ENST00000548539 CEP128Q6ZU80 1094 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 PWWP2AQ96N64 755 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 HIRIP3Q9BW71 556 aaPredicted RBP6.28□□□□□ -1.4
VPS29-205ENST00000548539 PCDHB14Q9Y5E9 798 aa6.28□□□□□ -1.4
VPS29-205ENST00000548539 UPK3BL1B0FP48 263 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 UPK3BL2E5RIL1 263 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 PNLIPP16233 465 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 KIR2DL1P43626 348 aaPredicted RBP6.27□□□□□ -1.41
VPS29-205ENST00000548539 KIR2DL2P43627 348 aaPredicted RBP6.27□□□□□ -1.41
VPS29-205ENST00000548539 RBL2Q08999 1139 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 CCDC144BQ3MJ40 725 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 RNF111Q6ZNA4 994 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 ANKS3Q6ZW76 656 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 CKAP2LQ8IYA6 745 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 ASCC2Q9H1I8 757 aaPredicted RBP6.27□□□□□ -1.41
VPS29-205ENST00000548539 STRIP2Q9ULQ0 834 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 CORINQ9Y5Q5 1042 aa6.27□□□□□ -1.41
VPS29-205ENST00000548539 PLCG1P19174 1290 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 EIF6P56537 245 aaKnown RBP6.26□□□□□ -1.41
VPS29-205ENST00000548539 RTP5Q14D33 572 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 HHIPL2Q6UWX4 724 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 WAPLQ7Z5K2 1190 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 HNRNPLLQ8WVV9 542 aaKnown RBP6.26□□□□□ -1.41
VPS29-205ENST00000548539 SHDQ96IW2 340 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 KREMEN1Q96MU8 473 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 ASPNQ9BXN1 380 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 PALD1Q9ULE6 856 aa6.26□□□□□ -1.41
VPS29-205ENST00000548539 SMAD7O15105 426 aaKnown RBP6.25□□□□□ -1.41
VPS29-205ENST00000548539 MPOP05164 745 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 LDHDQ86WU2 507 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 IGDCC3Q8IVU1 814 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 FAM169BQ8N8A8 192 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 ENOX1Q8TC92 643 aaKnown RBP6.25□□□□□ -1.41
VPS29-205ENST00000548539 MAP6Q96JE9 813 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 CRBNQ96SW2 442 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 ANTXR1Q9H6X2 564 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 ZSWIM4Q9H7M6 989 aa6.25□□□□□ -1.41
VPS29-205ENST00000548539 SSU72P8A0A1W2PR75 194 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 PRICKLE3O43900 615 aaPredicted RBP6.24□□□□□ -1.41
VPS29-205ENST00000548539 KCNC1P48547 511 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 BMS1Q14692 1282 aaKnown RBP6.24□□□□□ -1.41
VPS29-205ENST00000548539 REXO1Q8N1G1 1221 aaKnown RBP6.24□□□□□ -1.41
VPS29-205ENST00000548539 USHBP1Q8N6Y0 703 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 TP53I13Q8NBR0 393 aaPredicted RBP6.24□□□□□ -1.41
VPS29-205ENST00000548539 OSBPL2Q9H1P3 480 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 PIF1Q9H611 641 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 ZNRF3Q9ULT6 936 aa6.24□□□□□ -1.41
VPS29-205ENST00000548539 SUV39H1O43463 412 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 SMARCA5O60264 1052 aaPredicted RBP6.23□□□□□ -1.41
VPS29-205ENST00000548539 HTR3BO95264 441 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 GIPRP48546 466 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 ERVFRD-1P60508 538 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 TMEM62Q0P6H9 643 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 SOGA3Q5TF21 947 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 RUFY4Q6ZNE9 571 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 TMC6Q7Z403 805 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 LSRQ86X29 649 aaPredicted RBP6.23□□□□□ -1.41
VPS29-205ENST00000548539 SLFN12Q8IYM2 578 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 HHIPL1Q96JK4 782 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 TRIM55Q9BYV6 548 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 FOXP3Q9BZS1 431 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 EHMT1Q9H9B1 1298 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 KLHL14Q9P2G3 628 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 PRKAG3Q9UGI9 489 aa6.23□□□□□ -1.41
VPS29-205ENST00000548539 CNOT11Q9UKZ1 510 aaKnown RBP6.23□□□□□ -1.41
VPS29-205ENST00000548539 R3HCC1Q9Y3T6 440 aaKnown RBP6.23□□□□□ -1.41
VPS29-205ENST00000548539 K7ESM1 405 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 BUB1BO60566 1050 aaPredicted RBP6.22□□□□□ -1.41
VPS29-205ENST00000548539 ARL4AP40617 200 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 PCBP3P57721 371 aaKnown RBP6.22□□□□□ -1.41
VPS29-205ENST00000548539 RTP1P59025 263 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 CHMP4BP1P59074 171 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 NMIQ13287 307 aaPredicted RBP6.22□□□□□ -1.41
VPS29-205ENST00000548539 PPP2R5EQ16537 467 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 ZNF827Q17R98 1081 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 TMEM201Q5SNT2 666 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 ZFYVE27Q5T4F4 411 aa6.22□□□□□ -1.41
VPS29-205ENST00000548539 GIMAP6Q6P9H5 292 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms