RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 VPS53Q5VIR6 699 aa15.5■□□□□ 0.07
RTN3-212ENST00000543123 SMC5Q8IY18 1101 aa15.5■□□□□ 0.07
RTN3-212ENST00000543123 NUP133Q8WUM0 1156 aa15.5■□□□□ 0.07
RTN3-212ENST00000543123 CCDC171Q6TFL3 1326 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 SYNRGQ9UMZ2 1314 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 A0A0D9SFI3 127 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 A0A1W2PQ45 241 aaPredicted RBP15.49■□□□□ 0.07
RTN3-212ENST00000543123 A0A1W2PQY0 241 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 MOXD2PA6NHM9 499 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 POTEB2H3BUK9 544 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 DUSP11O75319 330 aaKnown RBP15.49■□□□□ 0.07
RTN3-212ENST00000543123 SNAI1O95863 264 aaPredicted RBP15.49■□□□□ 0.07
RTN3-212ENST00000543123 FGAP02671 866 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 FGRP09769 529 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 NT5C2P49902 561 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 ACVR2BQ13705 512 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 CCDC96Q2M329 555 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 RILPL2Q969X0 211 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 FAM227BQ96M60 508 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 RNF41Q9H4P4 317 aaPredicted RBP15.49■□□□□ 0.07
RTN3-212ENST00000543123 IL17RBQ9NRM6 502 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 RNF146Q9NTX7 359 aa15.49■□□□□ 0.07
RTN3-212ENST00000543123 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.49■□□□□ 0.07
RTN3-212ENST00000543123 ADAMTS4O75173 837 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 HSPD1P10809 573 aaKnown RBP15.48■□□□□ 0.07
RTN3-212ENST00000543123 TOP1P11387 765 aaKnown RBP15.48■□□□□ 0.07
RTN3-212ENST00000543123 NOVP48745 357 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 NMIQ13287 307 aaPredicted RBP15.48■□□□□ 0.07
RTN3-212ENST00000543123 RRP12Q5JTH9 1297 aaKnown RBP15.48■□□□□ 0.07
RTN3-212ENST00000543123 KCTD1Q719H9 257 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 CHD1LQ86WJ1 897 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 DEFB123Q8N688 67 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 PCSK9Q8NBP7 692 aaKnown RBP15.48■□□□□ 0.07
RTN3-212ENST00000543123 PDLIM7Q9NR12 457 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 PNMA2Q9UL42 364 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 TACC3Q9Y6A5 838 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 SMCHD1A6NHR9 2005 aa15.48■□□□□ 0.07
RTN3-212ENST00000543123 LTBP2Q14767 1821 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 MROH7Q68CQ1 1323 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 COL6A3P12111 3177 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 ASB14A6NK59 587 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 HIP1O00291 1037 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 NMT2O60551 498 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 CLTBP09497 229 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 ALAS1P13196 640 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 ACLYP53396 1101 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 TLE2Q04725 743 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 B4GALNT3Q6L9W6 998 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 MFSD6Q6ZSS7 791 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 ARMCX2Q7L311 632 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 LENG1Q96BZ8 264 aaPredicted RBP15.47■□□□□ 0.07
RTN3-212ENST00000543123 AGBL1Q96MI9 1066 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 TRERF1Q96PN7 1200 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 OSBPL3Q9H4L5 887 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 A1CFQ9NQ94 594 aaKnown RBP15.47■□□□□ 0.07
RTN3-212ENST00000543123 STARD7Q9NQZ5 370 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 TCP11L1Q9NUJ3 509 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 CCPG1Q9ULG6 757 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 PRR12Q9ULL5 1215 aa15.47■□□□□ 0.07
RTN3-212ENST00000543123 ZNF536O15090 1300 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 DCDC2CA8MYV0 355 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 ICAM1P05362 532 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 C6orf222P0C671 652 aaPredicted RBP15.46■□□□□ 0.07
RTN3-212ENST00000543123 CST5P28325 142 aaPredicted RBP15.46■□□□□ 0.07
RTN3-212ENST00000543123 NUCB1Q02818 461 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 CCDC144BQ3MJ40 725 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 AKNAD1Q5T1N1 836 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 CCDC174Q6PII3 467 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 ZNF589Q86UQ0 364 aaPredicted RBP15.46■□□□□ 0.07
RTN3-212ENST00000543123 CCDC144CPQ8IYA2 1237 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 FAM133AQ8N9E0 248 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 GLT1D1Q96MS3 346 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 INCENPQ9NQS7 918 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 DIAPH3Q9NSV4 1193 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 MTMR7Q9Y216 660 aa15.46■□□□□ 0.07
RTN3-212ENST00000543123 ELP1O95163 1332 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 PQBP1O60828 265 aaKnown RBP15.45■□□□□ 0.06
RTN3-212ENST00000543123 SDSP20132 328 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 KCNA10Q16322 511 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 KLHDC9Q8NEP7 349 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 ESR2Q92731 530 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 CHMP4CQ96CF2 233 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 FGD4Q96M96 766 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 TTC14Q96N46 770 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 TOX2Q96NM4 488 aa15.45■□□□□ 0.06
RTN3-212ENST00000543123 UPF3AQ9H1J1 476 aaKnown RBP15.45■□□□□ 0.06
RTN3-212ENST00000543123 ZNF213O14771 459 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 RAG1P15918 1043 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 GJA9P57773 515 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 HAND2P61296 217 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 CNTN2Q02246 1040 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 CCDC178Q5BJE1 867 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 SYDE2Q5VT97 1194 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 BTNL9Q6UXG8 535 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 NOL8Q76FK4 1167 aaKnown RBP15.44■□□□□ 0.06
RTN3-212ENST00000543123 ANKRD33Q7Z3H0 272 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 PLEKHM2Q8IWE5 1019 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 BADQ92934 168 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 TMEM47Q9BQJ4 181 aa15.44■□□□□ 0.06
RTN3-212ENST00000543123 RANBP17Q9H2T7 1088 aaKnown RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms