RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 AKAP11Q9UKA4 1901 aa17.17■□□□□ 0.34
CNOT9-208ENST00000542068 GLI3P10071 1580 aa17.17■□□□□ 0.34
CNOT9-208ENST00000542068 KRT26Q7Z3Y9 468 aa17.17■□□□□ 0.34
CNOT9-208ENST00000542068 CXCR5P32302 372 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 TROAPQ12815 778 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 NFIXQ14938 502 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 CCDC178Q5BJE1 867 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 ANKRD13CQ8N6S4 541 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 JAKMIP2Q96AA8 810 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 CRACR2AQ9BSW2 395 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 LIMA1Q9UHB6 759 aaKnown RBP17.16■□□□□ 0.34
CNOT9-208ENST00000542068 RWDD2AQ9UIY3 292 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 RCCD1A6NED2 376 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 IPO7O95373 1038 aaKnown RBP17.16■□□□□ 0.34
CNOT9-208ENST00000542068 INF2Q27J81 1249 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 PNMA1Q8ND90 353 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 HNRNPLLQ8WVV9 542 aaKnown RBP17.16■□□□□ 0.34
CNOT9-208ENST00000542068 LAMB4A4D0S4 1761 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 C6orf229H3BNL8 230 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 PRPF3O43395 683 aaKnown RBP17.16■□□□□ 0.34
CNOT9-208ENST00000542068 GTPBP6O43824 516 aaPredicted RBP17.16■□□□□ 0.34
CNOT9-208ENST00000542068 MYBL2P10244 700 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 SCG2P13521 617 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 CCDC51Q96ER9 411 aa17.16■□□□□ 0.34
CNOT9-208ENST00000542068 RIMBP2O15034 1052 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 IDEP14735 1019 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 HERVK_113P62684 666 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 ATP2C1P98194 919 aaPredicted RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 SLC7A5Q01650 507 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 KCTD19Q17RG1 926 aaPredicted RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 LRRC31Q6UY01 552 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 SH3RF3Q8TEJ3 882 aaPredicted RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 EHD4Q9H223 541 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 ACBD3Q9H3P7 528 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 EZH2Q15910 746 aaKnown RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 PDXDC2PQ6P474 469 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 MB21D1Q8N884 522 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 AFAP1L1Q8TED9 768 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 CDCA7Q9BWT1 371 aaPredicted RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 EHD2Q9NZN4 543 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 SPEF2Q9C093 1822 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 NKRFO15226 690 aaKnown RBP eCLIP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 GGCXP38435 758 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 UBA7P41226 1012 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 MTIF2P46199 727 aaKnown RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 SPAG1Q07617 926 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 FUT2Q10981 343 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 GRIK5Q16478 980 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 ZNF658Q5TYW1 1059 aaPredicted RBP17.15■□□□□ 0.34
CNOT9-208ENST00000542068 TMTC3Q6ZXV5 915 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 FAM71BQ8TC56 605 aa17.15■□□□□ 0.34
CNOT9-208ENST00000542068 ATRNO75882 1429 aa17.14■□□□□ 0.34
CNOT9-208ENST00000542068 TBC1D8BQ0IIM8 1120 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 STIM1Q13586 685 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 NPY5RQ15761 445 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 E2F4Q16254 413 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 CCDC96Q2M329 555 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 LETM2Q2VYF4 491 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 AMIGO3Q86WK7 504 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 IRF2BP1Q8IU81 584 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 PLEKP08567 350 aaPredicted RBP17.14■□□□□ 0.33
CNOT9-208ENST00000542068 AMPD2Q01433 879 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 TSPYL1Q9H0U9 437 aa17.14■□□□□ 0.33
CNOT9-208ENST00000542068 RBM28Q9NW13 759 aaKnown RBP17.14■□□□□ 0.33
CNOT9-208ENST00000542068 PDE2AO00408 941 aaPredicted RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 KIF5BP33176 963 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 USP14P54578 494 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 NAP1L1P55209 391 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 ENOX2Q16206 610 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 CSGALNACT2Q8N6G5 542 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 UBA5Q9GZZ9 404 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 TMEM60Q9H2L4 133 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 ZNHIT6Q9NWK9 470 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 FAM205AQ6ZU69 1335 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 IVLP07476 585 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 RPGRQ92834 1020 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 ARHGEF1Q92888 912 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 NUP188Q5SRE5 1749 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 EIF3CLB5ME19 914 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 CALM1P0DP23 149 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 CALM2P0DP24 149 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 CALM3P0DP25 149 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 HDAC7Q8WUI4 952 aa17.13■□□□□ 0.33
CNOT9-208ENST00000542068 EIF3CQ99613 913 aaKnown RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 ZNF219Q9P2Y4 722 aaPredicted RBP17.13■□□□□ 0.33
CNOT9-208ENST00000542068 MYH7P12883 1935 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 MARCH6O60337 910 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 WDR59Q6PJI9 974 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 SAMD1Q6SPF0 538 aaPredicted RBP17.12■□□□□ 0.33
CNOT9-208ENST00000542068 SND1Q7KZF4 910 aaKnown RBP eCLIP17.12■□□□□ 0.33
CNOT9-208ENST00000542068 PSD3Q9NYI0 1048 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 UFL1O94874 794 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 BMP15O95972 392 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 TYW1BQ6NUM6 668 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 TRAPPC11Q7Z392 1133 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 MLXIPQ9HAP2 919 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 FAM207AQ9NSI2 230 aaPredicted RBP17.12■□□□□ 0.33
CNOT9-208ENST00000542068 LRWD1Q9UFC0 647 aa17.12■□□□□ 0.33
CNOT9-208ENST00000542068 SEMA3EO15041 775 aa17.11■□□□□ 0.33
CNOT9-208ENST00000542068 SYF2O95926 243 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms