RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SLFN13Q68D06 897 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 C16orf59Q7L2K0 433 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 ARMCX2Q7L311 632 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 CCDC144CPQ8IYA2 1237 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 MSL3Q8N5Y2 521 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 GMCL1P1Q8NEA9 526 aa18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 CHMP4BQ9H444 224 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-213ENST00000541953 ZBED4O75132 1171 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 TTLL1O95922 423 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 ASGR1P07306 291 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 C6orf222P0C671 652 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 CST5P28325 142 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 GRIN2CQ14957 1233 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 TMEM63BQ5T3F8 832 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 CCDC129Q6ZRS4 1044 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 ZNF467Q7Z7K2 595 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 ZNF444Q8N0Y2 327 aaPredicted RBP18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 ANKRD35Q8N283 1001 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 USP38Q8NB14 1042 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 AGBL1Q96MI9 1066 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 TOX2Q96NM4 488 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.44■□□□□ 0.542e-7■■■□□ 15.3
CLSTN3-213ENST00000541953 UPF3AQ9H1J1 476 aaKnown RBP18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 PCDHB15Q9Y5E8 787 aa18.44■□□□□ 0.54
CLSTN3-213ENST00000541953 SOWAHBA6NEL2 793 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 MOXD2PA6NHM9 499 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 GRXCR1A8MXD5 290 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 PATL2C9JE40 543 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 TMEM232C9JQI7 657 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 NMT2O60551 498 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 BMP3P12645 472 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 CDK7P50613 346 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 BEX3Q00994 111 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 FAM133AQ8N9E0 248 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 NEDD1Q8NHV4 660 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 PURBQ96QR8 312 aaKnown RBP18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 FEM1BQ9UK73 627 aa18.43■□□□□ 0.54
CLSTN3-213ENST00000541953 XIRP2A4UGR9 3374 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 GBF1Q92538 1859 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 TIMP1P01033 207 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 ZFYP08048 801 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 FOSL2P15408 326 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 DNAJB2P25686 324 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 PBX2P40425 430 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 GJA9P57773 515 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 TFAP4Q01664 338 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 PPARAQ07869 468 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 ZMYM1Q5SVZ6 1142 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 ABHD16BQ9H3Z7 469 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 A1CFQ9NQ94 594 aaKnown RBP18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 IL17RBQ9NRM6 502 aa18.42■□□□□ 0.54
CLSTN3-213ENST00000541953 DCDC2CA8MYV0 355 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 TSPY3P0CV98 308 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 TSPY8P0CW00 308 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 GNAT2P19087 354 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 CTDSPL2Q05D32 466 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 KCTD1Q719H9 257 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 FAM126BQ8IXS8 530 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 CHST13Q8NET6 341 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 NUP133Q8WUM0 1156 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 GPATCH3Q96I76 525 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 PPP1R12CQ9BZL4 782 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 RNF146Q9NTX7 359 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 UMODL1Q5DID0 1318 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 SALL3Q9BXA9 1300 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 TTC28Q96AY4 2481 aa18.41■□□□□ 0.54
CLSTN3-213ENST00000541953 ACRP10323 421 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 CSF2RAP15509 400 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 MCCP23508 829 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 OAZ1P54368 228 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 MUM1L1Q5H9M0 696 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 TMEM240Q5SV17 173 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 VPS53Q5VIR6 699 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 MFSD5Q6N075 450 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 GLT1D1Q96MS3 346 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 FSD1Q9BTV5 496 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 ISY1Q9ULR0 285 aaKnown RBP18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 CTDP1Q9Y5B0 961 aaPredicted RBP18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 ELP1O95163 1332 aa18.4■□□□□ 0.54
CLSTN3-213ENST00000541953 ARVCFO00192 962 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 STAT2P52630 851 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 GNASQ5JWF2 1037 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 RASIP1Q5U651 963 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 CCDC174Q6PII3 467 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 NAPBQ9H115 298 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 ACAD9Q9H845 621 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 PRDM6Q9NQX0 595 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 PDGFCQ9NRA1 345 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 FBXO40Q9UH90 709 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 SYNPO2Q9UMS6 1093 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 GRIN2DO15399 1336 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 TTC41PQ6P2S7 1318 aa18.39■□□□□ 0.53
CLSTN3-213ENST00000541953 A0A0U1RQG5 324 aaPredicted RBP18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 ALAS1P13196 640 aa18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 CYP2C18P33260 490 aa18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 CXCL17Q6UXB2 119 aa18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 GMCL1Q96IK5 515 aa18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 MTMR7Q9Y216 660 aa18.38■□□□□ 0.53
CLSTN3-213ENST00000541953 GNEQ9Y223 722 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms