RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	VAMP1	P23763	118 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	GUCY2C	P25092	1073 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	PMS1	P54277	932 aa	Known RBP	6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	NR0B2	Q15466	257 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	ZXDC	Q2QGD7	858 aa	Predicted RBP	6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	NOL9	Q5SY16	702 aa	Known RBP	6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	C7orf61	Q8IZ16	206 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	GPRASP2	Q96D09	838 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	SHISA4	Q96DD7	197 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	TM9SF2	Q99805	663 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	PLCD4	Q9BRC7	762 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	SGPP1	Q9BX95	441 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	CWC22	Q9HCG8	908 aa	Known RBP	6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	PCDHB10	Q9UN67	800 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	GPR55	Q9Y2T6	319 aa	Predicted RBP	6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488	ZNF281	Q9Y2X9	895 aa		6.62	□□□□□ -1.35
PRKDC-210	ENST00000541488		H0Y8X5	98 aa		6.61	□□□□□ -1.35
PRKDC-210	ENST00000541488	RTP1	P59025	263 aa		6.61	□□□□□ -1.35
PRKDC-210	ENST00000541488	TCERG1L	Q5VWI1	586 aa		6.61	□□□□□ -1.35
PRKDC-210	ENST00000541488	INTS3	Q68E01	1043 aa	Known RBP	6.61	□□□□□ -1.35
PRKDC-210	ENST00000541488	TMEM132E	Q6IEE7	984 aa		6.61	□□□□□ -1.35
PRKDC-210	ENST00000541488	LTBP3	Q9NS15	1303 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	GSTM1	P09488	218 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	VAV1	P15498	845 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	NASP	P49321	788 aa	Predicted RBP	6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	EIF6	P56537	245 aa	Known RBP	6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	DLG4	P78352	724 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	PPP2R5E	Q16537	467 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	NLRX1	Q86UT6	975 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	RGS22	Q8NE09	1264 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	MCOLN1	Q9GZU1	580 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	ACBD3	Q9H3P7	528 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	ERVK13-1	Q9NX77	482 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	ZNF451	Q9Y4E5	1061 aa		6.6	□□□□□ -1.35
PRKDC-210	ENST00000541488	ADAMTS20	P59510	1910 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	MYOCOS	A0A1B0GUC4	107 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	OTOL1	A6NHN0	477 aa	Predicted RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	NRDC	O43847	1150 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	ZNF205	O95201	554 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	BMP8B	P34820	402 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	KIR2DL1	P43626	348 aa	Predicted RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	KIR2DL2	P43627	348 aa	Predicted RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	ZNF445	P59923	1031 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	PPP2R5D	Q14738	602 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	CWF19L1	Q69YN2	538 aa	Known RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	ADCY4	Q8NFM4	1077 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	CPLX3	Q8WVH0	158 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	FCRL2	Q96LA5	508 aa	Predicted RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	NOL6	Q9H6R4	1146 aa	Known RBP	6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	GP6	Q9HCN6	339 aa		6.59	□□□□□ -1.35
PRKDC-210	ENST00000541488	CD247	P20963	164 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	SNX17	Q15036	470 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	GNPTAB	Q3T906	1256 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	HSF5	Q4G112	596 aa	Predicted RBP	6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	IRF2BP1	Q8IU81	584 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	FIBCD1	Q8N539	461 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	TAB3	Q8N5C8	712 aa	Predicted RBP	6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	NAT16	Q8N8M0	369 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	RBBP8NL	Q8NC74	664 aa	Predicted RBP	6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	ZDHHC15	Q96MV8	337 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	SRRT	Q9BXP5	876 aa	Known RBP	6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	CNOT6	Q9ULM6	557 aa	Known RBP	6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	TAF6L	Q9Y6J9	622 aa		6.58	□□□□□ -1.36
PRKDC-210	ENST00000541488	OR14I1	A6ND48	311 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	FADS2P1	A8MWK0	482 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	GSN	P06396	782 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	PRKCA	P17252	672 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	SOX9	P48436	509 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	RTP2	Q5QGT7	225 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	ERICH6B	Q5W0A0	696 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	NUP43	Q8NFH3	380 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	FGD4	Q96M96	766 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	SLC12A9	Q9BXP2	914 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	ZNF214	Q9UL59	606 aa	Predicted RBP	6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	INPP5F	Q9Y2H2	1132 aa		6.57	□□□□□ -1.36
PRKDC-210	ENST00000541488	CD3E	P07766	207 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	INSRR	P14616	1297 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	IFNGR1	P15260	489 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	SRSF3	P84103	164 aa	Known RBP	6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	PUM1	Q14671	1186 aa	Known RBP eCLIP	6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	ADAT2	Q7Z6V5	191 aa	Known RBP	6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	TMEM52	Q8NDY8	209 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	SMARCC1	Q92922	1105 aa	Predicted RBP	6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	ZNF428	Q96B54	188 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	JMJD8	Q96S16	334 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	ZNF552	Q9H707	407 aa	Predicted RBP	6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	CCSER2	Q9H7U1	834 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	IMPACT	Q9P2X3	320 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488	TNFRSF10D	Q9UBN6	386 aa		6.56	□□□□□ -1.36
PRKDC-210	ENST00000541488		A0A1W2PQH9	124 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	CBFA2T2	O43439	604 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	SASH1	O94885	1247 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	ITGA4	P13612	1032 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	GIPR	P48546	466 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	CEBPA	P49715	358 aa	Predicted RBP	6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	COL9A2	Q14055	689 aa	Predicted RBP	6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	ZNF385B	Q569K4	471 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	GALNT18	Q6P9A2	607 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	ANAPC16	Q96DE5	110 aa		6.55	□□□□□ -1.36
PRKDC-210	ENST00000541488	HAUS7	Q99871	368 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms