RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 BRF1Q92994 677 aa21.83■■□□□ 1.09
VPS33A-205ENST00000541169 SPZ1Q9BXG8 430 aa21.83■■□□□ 1.09
VPS33A-205ENST00000541169 KLF18A0A0U1RQI7 1052 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 DHX16O60231 1041 aaKnown RBP21.82■■□□□ 1.08
VPS33A-205ENST00000541169 FCER1AP12319 257 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 XRCC5P13010 732 aaKnown RBP21.82■■□□□ 1.08
VPS33A-205ENST00000541169 RASGRP2Q7LDG7 609 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 CPXCR1Q8N123 301 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 CHMP4CQ96CF2 233 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 TCEANC2Q96MN5 208 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 BACH2Q9BYV9 841 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 ARHGAP39Q9C0H5 1083 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 PORCNQ9H237 461 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 RIOX1Q9H6W3 641 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 GPHNQ9NQX3 736 aaPredicted RBP21.82■■□□□ 1.08
VPS33A-205ENST00000541169 PTPN22Q9Y2R2 807 aa21.82■■□□□ 1.08
VPS33A-205ENST00000541169 PTPREP23469 700 aa21.81■■□□□ 1.08
VPS33A-205ENST00000541169 WDR78Q5VTH9 848 aa21.81■■□□□ 1.08
VPS33A-205ENST00000541169 STAG2Q8N3U4 1231 aa21.81■■□□□ 1.08
VPS33A-205ENST00000541169 ZNF274Q96GC6 653 aaPredicted RBP21.81■■□□□ 1.08
VPS33A-205ENST00000541169 UPF3BQ9BZI7 483 aaKnown RBP21.81■■□□□ 1.08
VPS33A-205ENST00000541169 UBA5Q9GZZ9 404 aa21.81■■□□□ 1.08
VPS33A-205ENST00000541169 RAVER2Q9HCJ3 691 aaKnown RBP21.81■■□□□ 1.08
VPS33A-205ENST00000541169 CCPG1Q9ULG6 757 aa21.81■■□□□ 1.08
VPS33A-205ENST00000541169 ZNF236Q9UL36 1845 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 NID2Q14112 1375 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 CPA1P15085 419 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 CTGFP29279 349 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 RGS2P41220 211 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 COL9A3Q14050 684 aaPredicted RBP21.8■■□□□ 1.08
VPS33A-205ENST00000541169 KCTD2Q14681 263 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 MICU3Q86XE3 530 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 RAET1EQ8TD07 263 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 PXYLP1Q8TE99 480 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 MTMR8Q96EF0 704 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 BRPF3Q9ULD4 1205 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 ZNF536O15090 1300 aa21.8■■□□□ 1.08
VPS33A-205ENST00000541169 ZBTB5O15062 677 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 METAP2P50579 478 aaKnown RBP eCLIP21.79■■□□□ 1.08
VPS33A-205ENST00000541169 GRB14Q14449 540 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 CDC37Q16543 378 aaPredicted RBP21.79■■□□□ 1.08
VPS33A-205ENST00000541169 RTN1Q16799 776 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 MORN1Q5T089 497 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 NBPF11Q86T75 865 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 RRP36Q96EU6 259 aaKnown RBP21.79■■□□□ 1.08
VPS33A-205ENST00000541169 MYL10Q9BUA6 226 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 AMNQ9BXJ7 453 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 ACAD9Q9H845 621 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 JMJD4Q9H9V9 463 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 RBM27Q9P2N5 1060 aaKnown RBP21.79■■□□□ 1.08
VPS33A-205ENST00000541169 GJD2Q9UKL4 321 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 PFASO15067 1338 aa21.79■■□□□ 1.08
VPS33A-205ENST00000541169 GOLGA8AA7E2F4 631 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 GOLGA8BA8MQT2 603 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 HOXC6P09630 235 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 FLT3LGP49771 235 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 NEK4P51957 841 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 PRKCZQ05513 592 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 APOBRQ0VD83 1088 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 MAP2K5Q13163 448 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 CCDC174Q6PII3 467 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 SAMD3Q8N6K7 520 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 SLAIN1Q8ND83 568 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 SEC63Q9UGP8 760 aaKnown RBP21.78■■□□□ 1.08
VPS33A-205ENST00000541169 DIS3Q9Y2L1 958 aaKnown RBP21.78■■□□□ 1.08
VPS33A-205ENST00000541169 ABCB11O95342 1321 aa21.78■■□□□ 1.08
VPS33A-205ENST00000541169 PNMA6FA0A0J9YX94 578 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 PEX10O60683 326 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 TOB2Q14106 344 aaPredicted RBP21.77■■□□□ 1.08
VPS33A-205ENST00000541169 TMTC3Q6ZXV5 915 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 FBXO11Q86XK2 927 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 RGS22Q8NE09 1264 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 USP6NLQ92738 828 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 AGBL1Q96MI9 1066 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 TRERF1Q96PN7 1200 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 MMP19Q99542 508 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 APBA2Q99767 749 aa21.77■■□□□ 1.08
VPS33A-205ENST00000541169 NAP1L2Q9ULW6 460 aaPredicted RBP21.77■■□□□ 1.08
VPS33A-205ENST00000541169 PLXNB2O15031 1838 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 ALAS1P13196 640 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 RABEP1Q15276 862 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 COL13A1Q5TAT6 717 aaPredicted RBP21.76■■□□□ 1.07
VPS33A-205ENST00000541169 DPP9Q86TI2 863 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 MCF2L2Q86YR7 1114 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 TEX2Q8IWB9 1127 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 DDX11Q96FC9 970 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 TBC1D32Q96NH3 1257 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 MCOLN1Q9GZU1 580 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 VAT1LQ9HCJ6 419 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 RNF146Q9NTX7 359 aa21.76■■□□□ 1.07
VPS33A-205ENST00000541169 MAP3K20Q9NYL2 800 aaKnown RBP21.76■■□□□ 1.07
VPS33A-205ENST00000541169 MRPL11Q9Y3B7 192 aaKnown RBP21.76■■□□□ 1.07
VPS33A-205ENST00000541169 MYH6P13533 1939 aa21.75■■□□□ 1.07
VPS33A-205ENST00000541169 ADORA2AP29274 412 aa21.75■■□□□ 1.07
VPS33A-205ENST00000541169 PDIA3P30101 505 aaKnown RBP21.75■■□□□ 1.07
VPS33A-205ENST00000541169 QRICH1Q2TAL8 776 aa21.75■■□□□ 1.07
VPS33A-205ENST00000541169 CPLX2Q6PUV4 134 aaKnown RBP21.75■■□□□ 1.07
VPS33A-205ENST00000541169 ANKRD35Q8N283 1001 aa21.75■■□□□ 1.07
VPS33A-205ENST00000541169 RIPK3Q9Y572 518 aa21.75■■□□□ 1.07
VPS33A-205ENST00000541169 hCG_1984214I3L0E3 225 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms