RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-238	ENST00000540663	CNGA1	P29973	690 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	SLC4A3	P48751	1232 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	KIAA1211	Q6ZU35	1233 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	RASGRP2	Q7LDG7	609 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	ANKRD35	Q8N283	1001 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	ENAH	Q8N8S7	591 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	PNMA1	Q8ND90	353 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	TRPV1	Q8NER1	839 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	MAP4K1	Q92918	833 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	CHMP4C	Q96CF2	233 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	AGBL1	Q96MI9	1066 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	ZKSCAN3	Q9BRR0	538 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	RANBP17	Q9H2T7	1088 aa	Known RBP	13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	RNF146	Q9NTX7	359 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	PFAS	O15067	1338 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	TNKS	O95271	1327 aa		13.86	□□□□□ -0.19
SYNE1-238	ENST00000540663	PLXNA1	Q9UIW2	1896 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	CYP21A2	P08686	494 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	MNX1	P50219	401 aa	Predicted RBP	13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	ASPRV1	Q53RT3	343 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	CCDC174	Q6PII3	467 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	MAMDC4	Q6UXC1	1216 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	DPF3	Q92784	378 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	TRERF1	Q96PN7	1200 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	ESYT1	Q9BSJ8	1104 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	C11orf49	Q9H6J7	331 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	GPCPD1	Q9NPB8	672 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	HOMER2	Q9NSB8	354 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	CCPG1	Q9ULG6	757 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	CNPY2	Q9Y2B0	182 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	NR2E3	Q9Y5X4	410 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	CEP290	O15078	2479 aa		13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.85	□□□□□ -0.19
SYNE1-238	ENST00000540663	ALAS1	P13196	640 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	SLC16A2	P36021	539 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	IFIT1B	Q5T764	474 aa	Known RBP	13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	TTBK2	Q6IQ55	1244 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	CASC1	Q6TDU7	716 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	RALYL	Q86SE5	291 aa	Known RBP	13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	ARRDC4	Q8NCT1	418 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	DIS3L	Q8TF46	1054 aa	Known RBP	13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	RBM8A	Q9Y5S9	174 aa	Known RBP	13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663	FRMPD3	Q5JV73	1810 aa		13.84	□□□□□ -0.19
SYNE1-238	ENST00000540663		E7EWF7	191 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	POTEB2	H3BUK9	544 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	COL6A1	P12109	1028 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	SART3	Q15020	963 aa	Known RBP	13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	SEC23A	Q15436	765 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	NCOA7	Q8NI08	942 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	A1CF	Q9NQ94	594 aa	Known RBP	13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	WDR19	Q8NEZ3	1342 aa		13.83	□□□□□ -0.2
SYNE1-238	ENST00000540663	ERICH2	A1L162	156 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	DNM1L	O00429	736 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	EVI5	O60447	810 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	SNAP25	P60880	206 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	PRAMEF19	Q5SWL8	479 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	CYB5R4	Q7L1T6	521 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	FAM133A	Q8N9E0	248 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	MAF1	Q9H063	256 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	LSG1	Q9H089	658 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	CYP39A1	Q9NYL5	469 aa		13.82	□□□□□ -0.2
SYNE1-238	ENST00000540663	LOC102724159	A0A0B4J2E5	919 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	ASB14	A6NK59	587 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	KBTBD13	C9JR72	458 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663		H0YGN5	161 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	CDC45	O75419	566 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	PARP1	P09874	1014 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	RARB	P10826	455 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	AKR1A1	P14550	325 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	PWP2	Q15269	919 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	ERICH6B	Q5W0A0	696 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	FGD4	Q96M96	766 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	MTA3	Q9BTC8	594 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	ABHD16B	Q9H3Z7	469 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	ANO2	Q9NQ90	1003 aa		13.81	□□□□□ -0.2
SYNE1-238	ENST00000540663	DNAH12	Q6ZR08	3092 aa		13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	IFIT3	O14879	490 aa	Known RBP	13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	SNAI1	O95863	264 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	GOLGA8H	P0CJ92	632 aa		13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	CNTN2	Q02246	1040 aa		13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	MUM1L1	Q5H9M0	696 aa		13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	FAM184B	Q9ULE4	1060 aa		13.8	□□□□□ -0.2
SYNE1-238	ENST00000540663	SOWAHB	A6NEL2	793 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	TAL1	P17542	331 aa	Predicted RBP	13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	ACVR2B	Q13705	512 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	WTAP	Q15007	396 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	RNF20	Q5VTR2	975 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	NSMF	Q6X4W1	530 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	STOX1	Q6ZVD7	989 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	ARMCX2	Q7L311	632 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	SKAP1	Q86WV1	359 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	ADGRF4	Q8IZF3	695 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	RGS22	Q8NE09	1264 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	UBA5	Q9GZZ9	404 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	XPNPEP3	Q9NQH7	507 aa		13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	ADD3	Q9UEY8	706 aa	Known RBP	13.79	□□□□□ -0.2
SYNE1-238	ENST00000540663	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.79	□□□□□ -0.2

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