RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MTMR6Q9Y217 621 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 PDE6AP16499 860 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 TCP11X2Q5H9J9 407 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ERMNQ8TAM6 284 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 SGSM3Q96HU1 749 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 PAWRQ96IZ0 340 aaKnown RBP9.56□□□□□ -0.88
YBX3-208ENST00000540447 DIABLOQ9NR28 239 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 RNF14Q9UBS8 474 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 RASSF3Q86WH2 238 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 RNF169Q8NCN4 708 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 RFWD2Q8NHY2 731 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 ZFP69BQ9UJL9 534 aa9.56□□□□□ -0.88
YBX3-208ENST00000540447 SOWAHDA6NJG2 315 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 USP27XA6NNY8 438 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 PFKFB2O60825 505 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 TMEM259Q4ZIN3 620 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 NEK9Q8TD19 979 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 CABP5Q9NP86 173 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 CECR2Q9BXF3 1484 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 PASKQ96RG2 1323 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 POC1B-GALNT4F8VUJ3 575 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 PPP1R37O75864 691 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 PFKFB1P16118 471 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 PECAM1P16284 738 aaPredicted RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 GUCY1A3Q02108 690 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 EHHADHQ08426 723 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 ADCY2Q08462 1091 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 MED21Q13503 144 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 CAPN12Q6ZSI9 719 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 UNC45AQ9H3U1 944 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 DKK3Q9UBP4 350 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 TEKT2Q9UIF3 430 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 DTNBO60941 627 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 GSTA2P09210 222 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 RBL2Q08999 1139 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 RPS6KA2Q15349 733 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 OGFOD1Q8N543 542 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 CCT8L2Q96SF2 557 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 OLFML3Q9NRN5 406 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 NSFL1CQ9UNZ2 370 aaKnown RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 RPL13P26373 211 aaKnown RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 ST13P50502 369 aaKnown RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 CEP85Q6P2H3 762 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 TMC5Q6UXY8 1006 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 ADAT2Q7Z6V5 191 aaKnown RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 DDHD1Q8NEL9 900 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 FAM81AQ8TBF8 368 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 LRRC37BQ96QE4 947 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 RIC8AQ9NPQ8 531 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 CARMIL2Q6F5E8 1435 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 KRT4P19013 534 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 ATP8B2P98198 1209 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 EGFL6Q8IUX8 553 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 TUBA8Q9NY65 449 aaPredicted RBP9.55□□□□□ -0.88
YBX3-208ENST00000540447 STRIP2Q9ULQ0 834 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 ORC6Q9Y5N6 252 aa9.55□□□□□ -0.88
YBX3-208ENST00000540447 TRIM37O94972 964 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MAN1A1P33908 653 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 KRT79Q5XKE5 535 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MCF2L2Q86YR7 1114 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 COG1Q8WTW3 980 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 ATP6V1G3Q96LB4 118 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 KLHL25Q9H0H3 589 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MAGEA13PA6NCF6 341 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 IKBKBO14920 756 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 STK10O94804 968 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 ANP32DO95626 131 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 UBTFL6P0CB48 400 aaPredicted RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 EPB41P11171 864 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 ATF2P15336 505 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 DNM2P50570 870 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 SMTNP53814 917 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 PLTPP55058 493 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 DAB2P98082 770 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 IL1RL1Q01638 556 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 AP1B1Q10567 949 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 TMED2Q15363 201 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 LRRC31Q6UY01 552 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 TRMT10CQ7L0Y3 403 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 GSPT2Q8IYD1 628 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 MRPL50Q8N5N7 158 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 PPP1R14BQ96C90 147 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MAD1L1Q9Y6D9 718 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 LSM1O15116 133 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 MAGOHP61326 146 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 MORC3Q14149 939 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 PTPROQ16827 1216 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 TRIM16LQ309B1 348 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 JADE1Q6IE81 842 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 BZW1Q7L1Q6 419 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 ZNF444Q8N0Y2 327 aaPredicted RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 BBOF1Q8ND07 529 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 MAGOHBQ96A72 148 aaKnown RBP9.54□□□□□ -0.88
YBX3-208ENST00000540447 TRIM16O95361 564 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 SERPINB1P30740 379 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 PLCD1P51178 756 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 ASPHQ12797 758 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 CUL1Q13616 776 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 RASA3Q14644 834 aa9.54□□□□□ -0.88
YBX3-208ENST00000540447 RCSD1Q6JBY9 416 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms