RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 TDRD3Q9H7E2 651 aaKnown RBP10.97□□□□□ -0.65
CLIP1-212ENST00000540304 SERTAD1Q9UHV2 236 aa10.97□□□□□ -0.65
CLIP1-212ENST00000540304 MDM2Q00987 491 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-212ENST00000540304 ZNF543Q08ER8 600 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 POSTNQ15063 836 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 SOGA3Q5TF21 947 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 USP49Q70CQ1 688 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 FOXP4Q8IVH2 680 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-212ENST00000540304 LARGE2Q8N3Y3 721 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 RNF217Q8TC41 542 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 SYMPKQ92797 1274 aaKnown RBP10.96□□□□□ -0.65
CLIP1-212ENST00000540304 UBA5Q9GZZ9 404 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 VPS33BQ9H267 617 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 VAT1LQ9HCJ6 419 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 C6orf50Q9HD87 102 aa10.96□□□□□ -0.65
CLIP1-212ENST00000540304 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLIP1-212ENST00000540304 ESYT2A0FGR8 921 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 VWA3AA6NCI4 1184 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 ACTN4O43707 911 aaKnown RBP10.96□□□□□ -0.66
CLIP1-212ENST00000540304 TPM3P06753 285 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 GNA11P29992 359 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 CERKLQ49MI3 558 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-212ENST00000540304 ARL6IP4Q66PJ3 421 aaKnown RBP10.96□□□□□ -0.66
CLIP1-212ENST00000540304 ZNF771Q7L3S4 317 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-212ENST00000540304 CEP120Q8N960 986 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 CCDC34Q96HJ3 373 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 ZNF277Q9NRM2 450 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-212ENST00000540304 PCDHA5Q9Y5H7 936 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 COL4A5P29400 1685 aa10.96□□□□□ -0.66
CLIP1-212ENST00000540304 SMCO2A6NFE2 343 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 GPATCH4Q5T3I0 446 aaKnown RBP10.95□□□□□ -0.66
CLIP1-212ENST00000540304 TATDN1Q6P1N9 297 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 KRT25Q7Z3Z0 450 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 PDILTQ8N807 584 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 EPSTI1Q96J88 318 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 PRMT6Q96LA8 375 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-212ENST00000540304 FAM196BA6NMK8 535 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 FOXN1O15353 648 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 VIL1P09327 827 aaKnown RBP10.95□□□□□ -0.66
CLIP1-212ENST00000540304 CDC25BP30305 580 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 ATP2B2Q01814 1243 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 DHX58Q96C10 678 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 TTC12Q9H892 705 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-212ENST00000540304 KANSL2Q9H9L4 492 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 GPCPD1Q9NPB8 672 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 TMOD2Q9NZR1 351 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 HDAC9Q9UKV0 1011 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 ARFGEF1Q9Y6D6 1849 aa10.95□□□□□ -0.66
CLIP1-212ENST00000540304 SMTNL1A8MU46 457 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 PSMD14O00487 310 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 RAD17O75943 681 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 TGFB2P61812 414 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 TPM4P67936 248 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 INF2Q27J81 1249 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 NT5DC1Q5TFE4 455 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 C4orf32Q8N8J7 132 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 GMLQ99445 158 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 PYM1Q9BRP8 204 aaKnown RBP10.94□□□□□ -0.66
CLIP1-212ENST00000540304 NYAP2Q9P242 653 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 A0A087X0B3 334 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 SPDYE2BA6NHP3 402 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 IKBKBO14920 756 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 SLFN14P0C7P3 912 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 SPDYE6P0CI01 402 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 LONP1P36776 959 aaKnown RBP10.94□□□□□ -0.66
CLIP1-212ENST00000540304 NONOQ15233 471 aaKnown RBP eCLIP10.94□□□□□ -0.66
CLIP1-212ENST00000540304 IL17AQ16552 155 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 CCDC96Q2M329 555 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 TMEM179Q6ZVK1 233 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 C17orf53Q8N3J3 647 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-212ENST00000540304 SMARCE1Q969G3 411 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 MKL1Q969V6 931 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 MRFAP1L1Q96HT8 127 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 PIM2Q9P1W9 311 aa10.94□□□□□ -0.66
CLIP1-212ENST00000540304 PNMA6FA0A0J9YX94 578 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 LAD1O00515 517 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 EEF2P13639 858 aaKnown RBP10.93□□□□□ -0.66
CLIP1-212ENST00000540304 SARSP49591 514 aaKnown RBP10.93□□□□□ -0.66
CLIP1-212ENST00000540304 PPP1R18Q6NYC8 613 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 CCDC125Q86Z20 511 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 DRC7Q8IY82 874 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 NIM1KQ8IY84 436 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 ADGRF4Q8IZF3 695 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 REXO1Q8N1G1 1221 aaKnown RBP10.93□□□□□ -0.66
CLIP1-212ENST00000540304 OGFOD1Q8N543 542 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 TRIML1Q8N9V2 468 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 JMJD4Q9H9V9 463 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 MAN1B1Q9UKM7 699 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 BRCA1P38398 1863 aaKnown RBP10.93□□□□□ -0.66
CLIP1-212ENST00000540304 DLGAP5Q15398 846 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 ABCB5Q2M3G0 1257 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 GRAMD1CQ8IYS0 662 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 DCAF4Q8WV16 495 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 CSRNP1Q96S65 589 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 ZNRF3Q9ULT6 936 aa10.93□□□□□ -0.66
CLIP1-212ENST00000540304 SMC2O95347 1197 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 ZBTB7AO95365 584 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 TXLNAP40222 546 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 ADCY7P51828 1080 aa10.92□□□□□ -0.66
CLIP1-212ENST00000540304 ICA1Q05084 483 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms