RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 RAPGEF1Q13905 1077 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 OR8K1Q8NGG5 319 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 TAOK3Q9H2K8 898 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.18□□□□□ -0.46
PBX1-212ENST00000540236 C15orf41Q9Y2V0 281 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 WDR91A4D1P6 747 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 PRDM1O75626 825 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 KLK7P49862 253 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 DDX42Q86XP3 938 aaKnown RBP eCLIP12.18□□□□□ -0.46
PBX1-212ENST00000540236 SCYL3Q8IZE3 742 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 HIPK4Q8NE63 616 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 AGAP11Q8TF27 550 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 CSRNP2Q9H175 543 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 RGL1Q9NZL6 768 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 TRIM33Q9UPN9 1127 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 THRAP3Q9Y2W1 955 aaKnown RBP12.18□□□□□ -0.46
PBX1-212ENST00000540236 CD109Q6YHK3 1445 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 SPDYE5A6NIY4 337 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 LSM1O15116 133 aaKnown RBP12.18□□□□□ -0.46
PBX1-212ENST00000540236 CHN1P15882 459 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 ADD1P35611 737 aaKnown RBP12.18□□□□□ -0.46
PBX1-212ENST00000540236 NUGGCQ68CJ6 796 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 BATF3Q9NR55 127 aa12.18□□□□□ -0.46
PBX1-212ENST00000540236 HMGB1P1B2RPK0 211 aaPredicted RBP12.17□□□□□ -0.46
PBX1-212ENST00000540236 MAP3K7O43318 606 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FSBPO95073 299 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 QPCTQ16769 361 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 SPATA21Q7Z572 469 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 LCA5Q86VQ0 697 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FAM81AQ8TBF8 368 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 RPS6KC1Q96S38 1066 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 A0A1B0GVG6 124 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 ZSCAN5CA6NGD5 496 aaPredicted RBP12.17□□□□□ -0.46
PBX1-212ENST00000540236 MTHFSDQ2M296 383 aaKnown RBP12.17□□□□□ -0.46
PBX1-212ENST00000540236 RNF220Q5VTB9 566 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 MSANTD4Q8NCY6 345 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 WASF1Q92558 559 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 NMD3Q96D46 503 aaKnown RBP12.17□□□□□ -0.46
PBX1-212ENST00000540236 ADAM33Q9BZ11 813 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 EIF2AK4Q9P2K8 1649 aaKnown RBP12.17□□□□□ -0.46
PBX1-212ENST00000540236 ARHGEF40Q8TER5 1519 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 B4E1Z4 1266 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FXR1P51114 621 aaKnown RBP eCLIP12.17□□□□□ -0.46
PBX1-212ENST00000540236 ASIC1P78348 528 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 ST3GAL1Q11201 340 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 ETNK1Q9HBU6 452 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 NKIRAS1Q9NYS0 192 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 ADGRL2O95490 1459 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 GRIN2AQ12879 1464 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FAM153BP0C7A2 387 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 CDC27P30260 824 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FAM153CQ494X1 144 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 MPRIPQ6WCQ1 1025 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 UTS2BQ765I0 119 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 PLVAPQ9BX97 442 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 HAUS4Q9H6D7 363 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 TBC1D7Q9P0N9 293 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 FAM153AQ9UHL3 310 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 RASAL2Q9UJF2 1139 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 ERICH1Q86X53 443 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 RAPGEF5Q92565 580 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 PNMA2Q9UL42 364 aa12.17□□□□□ -0.46
PBX1-212ENST00000540236 HNRNPRO43390 633 aaKnown RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 PAX3P23760 479 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 KRT31Q15323 416 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 CSGALNACT2Q8N6G5 542 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 NUP58Q9BVL2 599 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 CARD9Q9H257 536 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 SUGT1Q9Y2Z0 365 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 NUTM2BA6NNL0 878 aaPredicted RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 NUTM2EB1AL46 878 aaPredicted RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 RPS6KA5O75582 802 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 COL9A3Q14050 684 aaPredicted RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 IFI16Q16666 785 aaKnown RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 OSBPL3Q9H4L5 887 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 KDM5DQ9BY66 1539 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 A0A0G2JLW4 131 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 RAB27AP51159 221 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 CCDC57Q2TAC2 916 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 MDH1BQ5I0G3 518 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 TMEM110Q86TL2 294 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 RBM12Q9NTZ6 932 aaKnown RBP12.16□□□□□ -0.46
PBX1-212ENST00000540236 PCDHA13Q9Y5I0 950 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 DKC1O60832 514 aaKnown RBP eCLIP12.16□□□□□ -0.46
PBX1-212ENST00000540236 FAM200BP0CF97 657 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 SH2D4BQ5SQS7 431 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 SPATA1Q5VX52 437 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 KCNB2Q92953 911 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 SUN1O94901 812 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 KRT26Q7Z3Y9 468 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 CCHCR1Q8TD31 782 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 RPGRIP1Q96KN7 1286 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 VIPAS39Q9H9C1 493 aa12.16□□□□□ -0.46
PBX1-212ENST00000540236 NECTIN1Q15223 517 aa12.15□□□□□ -0.46
PBX1-212ENST00000540236 WDR75Q8IWA0 830 aaKnown RBP12.15□□□□□ -0.46
PBX1-212ENST00000540236 CFAP61Q8NHU2 1237 aa12.15□□□□□ -0.46
PBX1-212ENST00000540236 OSBPL9Q96SU4 736 aa12.15□□□□□ -0.46
PBX1-212ENST00000540236 TROQ12816 1431 aaPredicted RBP12.15□□□□□ -0.46
PBX1-212ENST00000540236 ARHGAP42A6NI28 874 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms