RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 RLBP1P12271 317 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 KLRC3Q07444 240 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 ARMCX2Q7L311 632 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 ANKRD35Q8N283 1001 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 SLC43A3Q8NBI5 491 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 FGD4Q96M96 766 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 C1QTNF1Q9BXJ1 281 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 PAG1Q9NWQ8 432 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 NYAP2Q9P242 653 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 FBXO40Q9UH90 709 aa13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 YBX2Q9Y2T7 364 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 CTDP1Q9Y5B0 961 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-209ENST00000539982 CABYRO75952 493 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 UBE3CQ15386 1083 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 AAK1Q2M2I8 961 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 OTOP2Q7RTS6 562 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 CHST13Q8NET6 341 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 KIF1BPQ96EK5 621 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 SEZ6LQ9BYH1 1024 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 HIPK3Q9H422 1215 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 SLC4A4Q9Y6R1 1079 aa13.95□□□□□ -0.18
CLSTN3-209ENST00000539982 ZBED9Q6R2W3 1325 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 NDUFB10O96000 172 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 BEX3Q00994 111 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 TNFAIP2Q03169 654 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 ITGA7Q13683 1181 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 CXCL17Q6UXB2 119 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 CCDC144CPQ8IYA2 1237 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 RPUSD2Q8IZ73 545 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 NECAB3Q96P71 396 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 KATNBL1Q9H079 304 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 BOLA2Q9H3K6 86 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 SLC38A10Q9HBR0 1119 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 RAVER2Q9HCJ3 691 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 SLC4A7Q9Y6M7 1214 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 CHD7Q9P2D1 2997 aa13.94□□□□□ -0.18
CLSTN3-209ENST00000539982 UMODL1Q5DID0 1318 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 ATP5JP18859 108 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 RABGGTBP53611 331 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 OAZ1P54368 228 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 CCL23P55773 120 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 PPP2R2DQ66LE6 453 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 NOL8Q76FK4 1167 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 KIFC2Q96AC6 838 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 MKNK2Q9HBH9 465 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 ARPP21Q9UBL0 812 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 CLIP2Q9UDT6 1046 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 FEM1BQ9UK73 627 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 PCDHA11Q9Y5I1 949 aa13.93□□□□□ -0.18
CLSTN3-209ENST00000539982 GRIN2DO15399 1336 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 CHGBP05060 677 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 POU3F3P20264 500 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 RASA1P20936 1047 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 HOXD11P31277 338 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 CNTN2Q02246 1040 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 TFF2Q03403 129 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 SBK1Q52WX2 424 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 MKL1Q969V6 931 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 HAUS7Q99871 368 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 NOC4LQ9BVI4 516 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 PUS7LQ9H0K6 701 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 GNEQ9Y223 722 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 ARIH1Q9Y4X5 557 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 MCM3APO60318 1980 aa13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 TCF20Q9UGU0 1960 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-209ENST00000539982 ASTN1O14525 1302 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 GBF1Q92538 1859 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 CCER2I3L3R5 266 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 ERC2O15083 957 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 ZEB2O60315 1214 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 MYOGP15173 224 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 FSCN1Q16658 493 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 ZSCAN25Q6NSZ9 544 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 MICALL1Q8N3F8 863 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 FAM133AQ8N9E0 248 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 AP5M1Q9H0R1 490 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 BCL11AQ9H165 835 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 TRPV6Q9H1D0 765 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 WNT8AQ9H1J5 351 aa13.91□□□□□ -0.18
CLSTN3-209ENST00000539982 REV3LO60673 3130 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 GREB1LQ9C091 1923 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 IGKV6D-41A0A0C4DH26 115 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 ASB14A6NK59 587 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 DYNC1LI2O43237 492 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 B4GALT4O60513 344 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 RAB11FIP3O75154 756 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 FDX1P10109 184 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 ATP2A2P16615 1042 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 KCNQ1P51787 676 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 SKIV2LQ15477 1246 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 IQSEC1Q6DN90 963 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 TLK2Q86UE8 772 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 RPAP2Q8IXW5 612 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 STK11IPQ8N1F8 1099 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 VWCEQ96DN2 955 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 AGBL1Q96MI9 1066 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 STRBPQ96SI9 672 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 SYNPO2Q9UMS6 1093 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms