RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 KRT40Q6A162 431 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 WWC2Q6AWC2 1192 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 FERMT3Q86UX7 667 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 CHURC1Q8WUH1 139 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 WNK4Q96J92 1243 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 C12orf42Q96LP6 360 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 FBXO28Q9NVF7 368 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 FEM1BQ9UK73 627 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 PRR12Q9ULL5 1215 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 KCNJ14Q9UNX9 436 aa16.31■□□□□ 0.2
CD4-208ENST00000538827 COL11A1P12107 1806 aaPredicted RBP16.31■□□□□ 0.2
CD4-208ENST00000538827 IRF6O14896 467 aa16.3■□□□□ 0.2
CD4-208ENST00000538827 FLOT1O75955 427 aa16.3■□□□□ 0.2
CD4-208ENST00000538827 F13A1P00488 732 aa16.3■□□□□ 0.2
CD4-208ENST00000538827 ZNF157P51786 506 aaPredicted RBP16.3■□□□□ 0.2
CD4-208ENST00000538827 CCDC174Q6PII3 467 aa16.3■□□□□ 0.2
CD4-208ENST00000538827 SLF1Q9BQI6 1058 aa16.3■□□□□ 0.2
CD4-208ENST00000538827 CTDP1Q9Y5B0 961 aaPredicted RBP16.3■□□□□ 0.2
CD4-208ENST00000538827 RBBP6Q7Z6E9 1792 aaKnown RBP16.29■□□□□ 0.2
CD4-208ENST00000538827 ZBTB5O15062 677 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 GJA5P36382 358 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 NAPAP54920 295 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 SAFBQ15424 915 aaKnown RBP eCLIP16.29■□□□□ 0.2
CD4-208ENST00000538827 QRICH1Q2TAL8 776 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 FOXD4L6Q3SYB3 417 aaPredicted RBP16.29■□□□□ 0.2
CD4-208ENST00000538827 BTNL9Q6UXG8 535 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 FOXD4L3Q6VB84 417 aaPredicted RBP16.29■□□□□ 0.2
CD4-208ENST00000538827 CCDC148Q8NFR7 591 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 ZDHHC9Q9Y397 364 aa16.29■□□□□ 0.2
CD4-208ENST00000538827 RLFQ13129 1914 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 A0A0G2JLL6 359 aaPredicted RBP16.28■□□□□ 0.2
CD4-208ENST00000538827 PNMA6FA0A0J9YX94 578 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 UNCXA6NJT0 531 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 STXBP3O00186 592 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 CXCL11O14625 94 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 PDIA4P13667 645 aaKnown RBP16.28■□□□□ 0.2
CD4-208ENST00000538827 NLRP5P59047 1200 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 USH1GQ495M9 461 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 SH3D19Q5HYK7 790 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 PRRT2Q7Z6L0 340 aaPredicted RBP16.28■□□□□ 0.2
CD4-208ENST00000538827 FBXO18Q8NFZ0 1043 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 TNPO1Q92973 898 aaKnown RBP16.28■□□□□ 0.2
CD4-208ENST00000538827 BRMS1Q9HCU9 246 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 KCNH4Q9UQ05 1017 aa16.28■□□□□ 0.2
CD4-208ENST00000538827 hCG_1984214I3L0E3 225 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 MMP1P03956 469 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 TAL1P17542 331 aaPredicted RBP16.27■□□□□ 0.2
CD4-208ENST00000538827 RESTQ13127 1097 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 SNAPC2Q13487 334 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 TREML2Q5T2D2 321 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 FBXO11Q86XK2 927 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 ZNF713Q8N859 430 aaPredicted RBP16.27■□□□□ 0.2
CD4-208ENST00000538827 CCDC12Q8WUD4 166 aaPredicted RBP16.27■□□□□ 0.2
CD4-208ENST00000538827 COA7Q96BR5 231 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 SHISA4Q96DD7 197 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 MTMR8Q96EF0 704 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 BARHL2Q9NY43 387 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 PPP1R9AQ9ULJ8 1098 aa16.27■□□□□ 0.2
CD4-208ENST00000538827 A0A0G2JMZ2 1700 aa16.27■□□□□ 0.19
CD4-208ENST00000538827 USP17L15C9J2P7 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L13C9JLJ4 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L11C9JVI0 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L18D6R9N7 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L22D6RA61 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L17D6RBQ6 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L19D6RCP7 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L20D6RJB6 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 PLA2G6O60733 806 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 PPP1R11O60927 126 aaPredicted RBP16.26■□□□□ 0.19
CD4-208ENST00000538827 SLC10A3P09131 477 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 KRT2P35908 639 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 USP17L24Q0WX57 530 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 PPP1R18Q6NYC8 613 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 DIS3L2Q8IYB7 885 aaKnown RBP16.26■□□□□ 0.19
CD4-208ENST00000538827 PROCA1Q8NCQ7 364 aaPredicted RBP16.26■□□□□ 0.19
CD4-208ENST00000538827 PHF20Q9BVI0 1012 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 RANBP17Q9H2T7 1088 aaKnown RBP16.26■□□□□ 0.19
CD4-208ENST00000538827 SH3GLB2Q9NR46 395 aa16.26■□□□□ 0.19
CD4-208ENST00000538827 KIF28PB7ZC32 967 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 CALML3P27482 149 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 FXR1P51114 621 aaKnown RBP eCLIP16.25■□□□□ 0.19
CD4-208ENST00000538827 ADCY7P51828 1080 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 IRX3P78415 501 aaPredicted RBP16.25■□□□□ 0.19
CD4-208ENST00000538827 TYW1BQ6NUM6 668 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 RASAL3Q86YV0 1011 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 PRPF38AQ8NAV1 312 aaKnown RBP16.25■□□□□ 0.19
CD4-208ENST00000538827 ATG4CQ96DT6 458 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 AMNQ9BXJ7 453 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 AGTPBP1Q9UPW5 1226 aa16.25■□□□□ 0.19
CD4-208ENST00000538827 TCHHQ07283 1943 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 CCL15-CCL14A0A0B4J2E2 113 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 ZBED4O75132 1171 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 NCLP19338 710 aaKnown RBP16.24■□□□□ 0.19
CD4-208ENST00000538827 GTF2A2P52657 109 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 CCL15Q16663 113 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 SPRYD7Q5W111 196 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 FBXO46Q6PJ61 603 aaPredicted RBP16.24■□□□□ 0.19
CD4-208ENST00000538827 CATSPERGQ6ZRH7 1159 aa16.24■□□□□ 0.19
CD4-208ENST00000538827 FASTKD5Q7L8L6 764 aaKnown RBP16.24■□□□□ 0.19
CD4-208ENST00000538827 C6orf50Q9HD87 102 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms