RNA–Protein interactions for RNA: ENST00000535685.1

CCDC60-202, Transcript of coiled-coil domain containing 60, humanhuman

TSL 3

Gene CCDC60, Length 446 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-202ENST00000535685 MSL3Q8N5Y2 521 aaKnown RBP12.8□□□□□ -0.36
CCDC60-202ENST00000535685 TMC2Q8TDI7 906 aa12.8□□□□□ -0.36
CCDC60-202ENST00000535685 MMP19Q99542 508 aa12.8□□□□□ -0.36
CCDC60-202ENST00000535685 NUP88Q99567 741 aaPredicted RBP12.8□□□□□ -0.36
CCDC60-202ENST00000535685 SLC38A10Q9HBR0 1119 aa12.8□□□□□ -0.36
CCDC60-202ENST00000535685 LAMA4Q16363 1823 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 SEPT4O43236 478 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 ZBED4O75132 1171 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 HSPD1P10809 573 aaKnown RBP12.79□□□□□ -0.36
CCDC60-202ENST00000535685 BMP3P12645 472 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 FXR1P51114 621 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCDC60-202ENST00000535685 IRX5P78411 483 aaPredicted RBP12.79□□□□□ -0.36
CCDC60-202ENST00000535685 KCTD2Q14681 263 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 FAM47AQ5JRC9 791 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 SLFN13Q68D06 897 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 FAM227BQ96M60 508 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 OCEL1Q9H607 264 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 IL17RBQ9NRM6 502 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 TCP11L1Q9NUJ3 509 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 TACC3Q9Y6A5 838 aa12.79□□□□□ -0.36
CCDC60-202ENST00000535685 DNAJC25-GNG10A0A024R161 153 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 TSPY2A6NKD2 308 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 DNM1LO00429 736 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 RAD21O60216 631 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 SDSP20132 328 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 BMP8BP34820 402 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 MFAP1P55081 439 aaKnown RBP12.78□□□□□ -0.36
CCDC60-202ENST00000535685 CTDSPL2Q05D32 466 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 NMIQ13287 307 aaPredicted RBP12.78□□□□□ -0.36
CCDC60-202ENST00000535685 DSG2Q14126 1118 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 FAM160B2Q86V87 743 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 CHST13Q8NET6 341 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 CHURC1Q8WUH1 139 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 STAG1Q8WVM7 1258 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 TINF2Q9BSI4 451 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 FBXO40Q9UH90 709 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 CCDC171Q6TFL3 1326 aa12.78□□□□□ -0.36
CCDC60-202ENST00000535685 TRIM6-TRIM34B2RNG4 842 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 HIP1O00291 1037 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 SNRNP48Q6IEG0 339 aaKnown RBP12.77□□□□□ -0.37
CCDC60-202ENST00000535685 RCSD1Q6JBY9 416 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 B4GALNT3Q6L9W6 998 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 MAMDC4Q6UXC1 1216 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 ZNF589Q86UQ0 364 aaPredicted RBP12.77□□□□□ -0.37
CCDC60-202ENST00000535685 LRRC47Q8N1G4 583 aaKnown RBP12.77□□□□□ -0.37
CCDC60-202ENST00000535685 ARRDC4Q8NCT1 418 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 GDF15Q99988 308 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 RBM27Q9P2N5 1060 aaKnown RBP12.77□□□□□ -0.37
CCDC60-202ENST00000535685 RIPK3Q9Y572 518 aa12.77□□□□□ -0.37
CCDC60-202ENST00000535685 SUPT16HQ9Y5B9 1047 aaKnown RBP12.77□□□□□ -0.37
CCDC60-202ENST00000535685 CNGA1P29973 690 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 SLC1A4P43007 532 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 STAT2P52630 851 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 TKFCQ3LXA3 575 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 RILPL2Q969X0 211 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 TTC14Q96N46 770 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 INCENPQ9NQS7 918 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 BOLA1Q9Y3E2 137 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 SYNGAP1Q96PV0 1343 aa12.76□□□□□ -0.37
CCDC60-202ENST00000535685 TMEM232C9JQI7 657 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 ZNF536O15090 1300 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 RANBP6O60518 1105 aaKnown RBP12.75□□□□□ -0.37
CCDC60-202ENST00000535685 PGK2P07205 417 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 ZNF865P0CJ78 1059 aaPredicted RBP12.75□□□□□ -0.37
CCDC60-202ENST00000535685 LRRC26Q2I0M4 334 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 AKNAD1Q5T1N1 836 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 BTNL9Q6UXG8 535 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 C7orf61Q8IZ16 206 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 DCAF4Q8WV16 495 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 KIFC2Q96AC6 838 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 STX8Q9UNK0 236 aa12.75□□□□□ -0.37
CCDC60-202ENST00000535685 CTDP1Q9Y5B0 961 aaPredicted RBP12.75□□□□□ -0.37
CCDC60-202ENST00000535685 NMT2O60551 498 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 TOP1P11387 765 aaKnown RBP12.74□□□□□ -0.37
CCDC60-202ENST00000535685 MCCP23508 829 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 SNX17Q15036 470 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 PRAMEF19Q5SWL8 479 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 C1orf53Q5VUE5 145 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 CPXCR1Q8N123 301 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 DDX11Q96FC9 970 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 DSCC1Q9BVC3 393 aa12.74□□□□□ -0.37
CCDC60-202ENST00000535685 RNF41Q9H4P4 317 aaPredicted RBP12.74□□□□□ -0.37
CCDC60-202ENST00000535685 RAVER2Q9HCJ3 691 aaKnown RBP12.74□□□□□ -0.37
CCDC60-202ENST00000535685 LCTP09848 1927 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 MYH6P13533 1939 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 DPYSL4O14531 572 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 SNAI1O95863 264 aaPredicted RBP12.73□□□□□ -0.37
CCDC60-202ENST00000535685 AKR1A1P14550 325 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 FOXK1P85037 733 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 LRRC41Q15345 812 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 MFSD6Q6ZSS7 791 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 FGD4Q96M96 766 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 TMEM121BQ9BXQ6 578 aaPredicted RBP12.73□□□□□ -0.37
CCDC60-202ENST00000535685 SENP6Q9GZR1 1112 aaPredicted RBP12.73□□□□□ -0.37
CCDC60-202ENST00000535685 ACAD9Q9H845 621 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 DIAPH3Q9NSV4 1193 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 PRR12Q9ULL5 1215 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 CNPY2Q9Y2B0 182 aa12.73□□□□□ -0.37
CCDC60-202ENST00000535685 KBTBD13C9JR72 458 aa12.72□□□□□ -0.37
CCDC60-202ENST00000535685 SNHG28P0DPA3 235 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms