RNA–Protein interactions for RNA: ENST00000533961.1

RDX-215, Transcript of radixin, human

TSL 2

Gene RDX, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RDX-215	ENST00000533961	UPK3BL2	E5RIL1	263 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	MATN3	O15232	486 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	LRRN2	O75325	713 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	SDHB	P21912	280 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	COL9A2	Q14055	689 aa	Predicted RBP	5.69	□□□□□ -1.5
RDX-215	ENST00000533961	INTS3	Q68E01	1043 aa	Known RBP	5.69	□□□□□ -1.5
RDX-215	ENST00000533961	RNF111	Q6ZNA4	994 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	NKD1	Q969G9	470 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	VWCE	Q96DN2	955 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	MAP6	Q96JE9	813 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	CNNM2	Q9H8M5	875 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	BRMS1	Q9HCU9	246 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	USP40	Q9NVE5	1235 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	PRR13	Q9NZ81	148 aa		5.69	□□□□□ -1.5
RDX-215	ENST00000533961	SCAMP3	O14828	347 aa	Known RBP	5.68	□□□□□ -1.5
RDX-215	ENST00000533961	FFAR3	O14843	346 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	BUB1B	O60566	1050 aa	Predicted RBP	5.68	□□□□□ -1.5
RDX-215	ENST00000533961	ARL4A	P40617	200 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	HMGA2	P52926	109 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	ADAM17	P78536	824 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	HDLBP	Q00341	1268 aa	Known RBP	5.68	□□□□□ -1.5
RDX-215	ENST00000533961	FANCC	Q00597	558 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	WAPL	Q7Z5K2	1190 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	RNF34	Q969K3	372 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	SPON2	Q9BUD6	331 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	KLHL14	Q9P2G3	628 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	ADAMTS1	Q9UHI8	967 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	PCDHA5	Q9Y5H7	936 aa		5.68	□□□□□ -1.5
RDX-215	ENST00000533961	SHISA3	A0PJX4	238 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	NLRC3	Q7RTR2	1065 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	TMC6	Q7Z403	805 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	NPM2	Q86SE8	214 aa	Known RBP	5.67	□□□□□ -1.5
RDX-215	ENST00000533961	TAB3	Q8N5C8	712 aa	Predicted RBP	5.67	□□□□□ -1.5
RDX-215	ENST00000533961	DAGLB	Q8NCG7	672 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	FBXO27	Q8NI29	283 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	SYTL5	Q8TDW5	730 aa	Predicted RBP	5.67	□□□□□ -1.5
RDX-215	ENST00000533961	DHRS1	Q96LJ7	313 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	SMPD4	Q9NXE4	827 aa		5.67	□□□□□ -1.5
RDX-215	ENST00000533961	TNFRSF10C	O14798	259 aa		5.66	□□□□□ -1.5
RDX-215	ENST00000533961	RBM10	P98175	930 aa	Known RBP	5.66	□□□□□ -1.5
RDX-215	ENST00000533961	ARSH	Q5FYA8	562 aa		5.66	□□□□□ -1.5
RDX-215	ENST00000533961	USP48	Q86UV5	1035 aa		5.66	□□□□□ -1.5
RDX-215	ENST00000533961	FERMT3	Q86UX7	667 aa		5.66	□□□□□ -1.5
RDX-215	ENST00000533961	ZNF655	Q8N720	491 aa	Predicted RBP	5.66	□□□□□ -1.5
RDX-215	ENST00000533961	KIF2C	Q99661	725 aa		5.66	□□□□□ -1.5
RDX-215	ENST00000533961	TLR3	O15455	904 aa	Known RBP	5.65	□□□□□ -1.5
RDX-215	ENST00000533961	CLEC3A	O75596	197 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	CRK	P46108	304 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	RTP1	P59025	263 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	LAPTM5	Q13571	262 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	RAB3GAP1	Q15042	981 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	SEZ6	Q53EL9	994 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	OVOS1	Q6IE37	1185 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	GALNT18	Q6P9A2	607 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	METTL16	Q86W50	562 aa	Known RBP	5.65	□□□□□ -1.5
RDX-215	ENST00000533961	SMARCC1	Q92922	1105 aa	Predicted RBP	5.65	□□□□□ -1.5
RDX-215	ENST00000533961	ATG4C	Q96DT6	458 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	HHIPL1	Q96JK4	782 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	UBP1	Q9NZI7	540 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	ZNRF3	Q9ULT6	936 aa		5.65	□□□□□ -1.5
RDX-215	ENST00000533961	SSU72P8	A0A1W2PR75	194 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	C1QTNF3-AMACR	E9PGA6	284 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	DNAJA2	O60884	412 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	UBOX5	O94941	541 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	NME1	P15531	152 aa	Known RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	MCM4	P33991	863 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	PCBP3	P57721	371 aa	Known RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	RACK1	P63244	317 aa	Known RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	NMI	Q13287	307 aa	Predicted RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	NBPF12	Q5TAG4	269 aa	Predicted RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	NT5DC1	Q5TFE4	455 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	NT5DC4	Q86YG4	428 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	ZNF654	Q8IZM8	581 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	USHBP1	Q8N6Y0	703 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.64	□□□□□ -1.51
RDX-215	ENST00000533961	TM9SF2	Q99805	663 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	MENT	Q9BUN1	341 aa		5.64	□□□□□ -1.51
RDX-215	ENST00000533961	WTIP	A6NIX2	430 aa	Predicted RBP	5.63	□□□□□ -1.51
RDX-215	ENST00000533961		E9PSI1	815 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	ITGB3	P05106	788 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	PFKL	P17858	780 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	NCKAP1L	P55160	1127 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	NBPF9	Q3BBW0	867 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	CPZ	Q66K79	652 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	GK5	Q6ZS86	529 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	EAF1	Q96JC9	268 aa	Predicted RBP	5.63	□□□□□ -1.51
RDX-215	ENST00000533961	PLCD4	Q9BRC7	762 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	FOXP3	Q9BZS1	431 aa		5.63	□□□□□ -1.51
RDX-215	ENST00000533961	DDX41	Q9UJV9	622 aa	Known RBP	5.63	□□□□□ -1.51
RDX-215	ENST00000533961	GDF5	P43026	501 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	CLC	Q05315	142 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	BBS9	Q3SYG4	887 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	LINC00116	Q8NCU8	138 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	HDAC8	Q9BY41	377 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	ACBD3	Q9H3P7	528 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	TNFRSF10D	Q9UBN6	386 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	TCFL5	Q9UL49	500 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	SLC12A7	Q9Y666	1083 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	TAF6L	Q9Y6J9	622 aa		5.62	□□□□□ -1.51
RDX-215	ENST00000533961	IRS2	Q9Y4H2	1338 aa		5.62	□□□□□ -1.51

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