RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PTPRGP23470 1445 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 TMEM82A0PJX8 343 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 ETV2O00321 342 aaPredicted RBP6.36□□□□□ -1.39
CD44-235ENST00000532339 PSPNO60542 156 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 USP2O75604 605 aaPredicted RBP6.36□□□□□ -1.39
CD44-235ENST00000532339 PDE6BP35913 854 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 SLC14A2Q15849 920 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 BBS9Q3SYG4 887 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 ZNF394Q53GI3 561 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 FBLN7Q53RD9 439 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 ATG14Q6ZNE5 492 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 FERD3LQ96RJ6 166 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 CD320Q9NPF0 282 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 PRR13Q9NZ81 148 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 FBXL21Q9UKT6 434 aa6.36□□□□□ -1.39
CD44-235ENST00000532339 RUSC2Q8N2Y8 1516 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 ARAP3Q8WWN8 1544 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 NPIPB6E9PJ23 425 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 NRDCO43847 1150 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 PEX10O60683 326 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 FKTNO75072 461 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 AUHQ13825 339 aaKnown RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 KCNA10Q16322 511 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 CEP128Q6ZU80 1094 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 ZNF605Q86T29 641 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 NLRX1Q86UT6 975 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 C1QL4Q86Z23 238 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 TAB3Q8N5C8 712 aaPredicted RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 SHISA4Q96DD7 197 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 FCRL2Q96LA5 508 aaPredicted RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 TM9SF2Q99805 663 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 ZNF552Q9H707 407 aaPredicted RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 GFOD1Q9NXC2 390 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 SUCOQ9UBS9 1254 aaKnown RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 PCDHGB7Q9Y5F8 929 aa6.35□□□□□ -1.39
CD44-235ENST00000532339 ARID1BQ8NFD5 2236 aaPredicted RBP6.35□□□□□ -1.39
CD44-235ENST00000532339 UHRF1BP1LA0JNW5 1464 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 CD109Q6YHK3 1445 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 NOTOA8MTQ0 251 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 SEMA7AO75326 666 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 HHIPL1Q96JK4 782 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 MCOLN1Q9GZU1 580 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 CRTAC1Q9NQ79 661 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 TNFRSF10DQ9UBN6 386 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 MINPP1Q9UNW1 487 aa6.34□□□□□ -1.39
CD44-235ENST00000532339 SMG5Q9UPR3 1016 aaKnown RBP6.34□□□□□ -1.39
CD44-235ENST00000532339 PREX1Q8TCU6 1659 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 OR14I1A6ND48 311 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 FAM86C2PA6NEL3 165 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 MEIS1O00470 390 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 SCAMP3O14828 347 aaKnown RBP6.33□□□□□ -1.4
CD44-235ENST00000532339 ACRP10323 421 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 VAMP1P23763 118 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 BMP8BP34820 402 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 PMS1P54277 932 aaKnown RBP6.33□□□□□ -1.4
CD44-235ENST00000532339 CIAPIN1Q6FI81 312 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 TMEM132EQ6IEE7 984 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 NPM2Q86SE8 214 aaKnown RBP6.33□□□□□ -1.4
CD44-235ENST00000532339 SIAH1Q8IUQ4 282 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 CCDC144CPQ8IYA2 1237 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 C7orf61Q8IZ16 206 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 SMARCC1Q92922 1105 aaPredicted RBP6.33□□□□□ -1.4
CD44-235ENST00000532339 DDX41Q9UJV9 622 aaKnown RBP6.33□□□□□ -1.4
CD44-235ENST00000532339 CUX1P39880 1505 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 CUL7Q14999 1698 aa6.33□□□□□ -1.4
CD44-235ENST00000532339 TEX51A0A1B0GUA7 166 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 ZNF205O95201 554 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 RECKO95980 971 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 CTSKP43235 329 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 GALK1P51570 392 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 RTP1P59025 263 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 RACK1P63244 317 aaKnown RBP6.32□□□□□ -1.4
CD44-235ENST00000532339 COL9A2Q14055 689 aaPredicted RBP6.32□□□□□ -1.4
CD44-235ENST00000532339 ADGRF1Q5T601 910 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 FBXW10Q5XX13 1052 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 ZPBP2Q6X784 338 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 SIRT2Q8IXJ6 389 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 ZNF654Q8IZM8 581 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 RBBP8NLQ8NC74 664 aaPredicted RBP6.32□□□□□ -1.4
CD44-235ENST00000532339 RGS22Q8NE09 1264 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 DSCC1Q9BVC3 393 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 POGZQ7Z3K3 1410 aa6.32□□□□□ -1.4
CD44-235ENST00000532339 KDM5BQ9UGL1 1544 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 MYOCOSA0A1B0GUC4 107 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 WTIPA6NIX2 430 aaPredicted RBP6.31□□□□□ -1.4
CD44-235ENST00000532339 FADS2P1A8MWK0 482 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 C9IYK1 514 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 HRKO00198 91 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 TOM1O60784 492 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 GSNP06396 782 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 ZSCAN22P10073 491 aaPredicted RBP6.31□□□□□ -1.4
CD44-235ENST00000532339 VAV1P15498 845 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 PNLIPP16233 465 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 GUCY2CP25092 1073 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 LINC00310P59036 64 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 DLG4P78352 724 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 GALNT18Q6P9A2 607 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 SPATA32Q96LK8 384 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 CDADC1Q9BWV3 514 aa6.31□□□□□ -1.4
CD44-235ENST00000532339 PPT2Q9UMR5 302 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms