RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 KCTD1Q719H9 257 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 SMC5Q8IY18 1101 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 DEFB123Q8N688 67 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 AGBL1Q96MI9 1066 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 TSEN34Q9BSV6 310 aaKnown RBP18.68■□□□□ 0.58
CPSF1-205ENST00000531042 PRDM5Q9NQX1 630 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-205ENST00000531042 PDLIM7Q9NR12 457 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 HOMER2Q9NSB8 354 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-205ENST00000531042 ZHX1Q9UKY1 873 aaPredicted RBP18.68■□□□□ 0.58
CPSF1-205ENST00000531042 SYNRGQ9UMZ2 1314 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 MCM3APO60318 1980 aa18.68■□□□□ 0.58
CPSF1-205ENST00000531042 A0A1W2PQ45 241 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-205ENST00000531042 A0A1W2PQY0 241 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 TRIM6-TRIM34B2RNG4 842 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 HSPD1P10809 573 aaKnown RBP18.67■□□□□ 0.58
CPSF1-205ENST00000531042 TLE2Q04725 743 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 NMIQ13287 307 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-205ENST00000531042 ACVR2BQ13705 512 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 SH3RF1Q7Z6J0 888 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 ZNF589Q86UQ0 364 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-205ENST00000531042 ABHD16BQ9H3Z7 469 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 RWDD1Q9H446 243 aaPredicted RBP18.67■□□□□ 0.58
CPSF1-205ENST00000531042 ACAD9Q9H845 621 aa18.67■□□□□ 0.58
CPSF1-205ENST00000531042 TRIM43BA6NCK2 446 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 DUSP11O75319 330 aaKnown RBP18.66■□□□□ 0.58
CPSF1-205ENST00000531042 TKFCQ3LXA3 575 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 B4GALNT3Q6L9W6 998 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 Q7L0L9 218 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 ARMCX2Q7L311 632 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 RASGRP2Q7LDG7 609 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 KLHDC9Q8NEP7 349 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 TRIM43Q96BQ3 446 aaPredicted RBP18.66■□□□□ 0.58
CPSF1-205ENST00000531042 RNF146Q9NTX7 359 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 PRR12Q9ULL5 1215 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 ZMYM6O95789 1325 aa18.66■□□□□ 0.58
CPSF1-205ENST00000531042 POTEB2H3BUK9 544 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 ADCY6O43306 1168 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 ACLYP53396 1101 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CNTN2Q02246 1040 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CCDC144BQ3MJ40 725 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 RRP12Q5JTH9 1297 aaKnown RBP18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CCSAPQ6IQ19 270 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CCDC174Q6PII3 467 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CCDC144CPQ8IYA2 1237 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 FAM133AQ8N9E0 248 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 BADQ92934 168 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 RILPL2Q969X0 211 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 TRERF1Q96PN7 1200 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 A1CFQ9NQ94 594 aaKnown RBP18.65■□□□□ 0.58
CPSF1-205ENST00000531042 TOMM22Q9NS69 142 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 MTMR7Q9Y216 660 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 CCDC171Q6TFL3 1326 aa18.65■□□□□ 0.58
CPSF1-205ENST00000531042 MOXD2PA6NHM9 499 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 IGHDP01880 384 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 ALAS1P13196 640 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 SNAP25P60880 206 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 KCNA10Q16322 511 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 CHD1LQ86WJ1 897 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 DCAF4Q8WV16 495 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 KATNBL1Q9H079 304 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 TCP11L1Q9NUJ3 509 aa18.64■□□□□ 0.57
CPSF1-205ENST00000531042 MYADML2A6NDP7 307 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 SOWAHBA6NEL2 793 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 CLTBP09497 229 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 SDSP20132 328 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 CST5P28325 142 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-205ENST00000531042 NUCB1Q02818 461 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 CCDC96Q2M329 555 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 PLEKHM2Q8IWE5 1019 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 NUP133Q8WUM0 1156 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 TMEM47Q9BQJ4 181 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 OSBPL3Q9H4L5 887 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 STARD7Q9NQZ5 370 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 MTMR10Q9NXD2 777 aa18.63■□□□□ 0.57
CPSF1-205ENST00000531042 PQBP1O60828 265 aaKnown RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 C6orf222P0C671 652 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 TOP1P11387 765 aaKnown RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 ITGB8P26012 769 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 GJA9P57773 515 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 HAND2P61296 217 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 IRX5P78411 483 aaPredicted RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 SHHQ15465 462 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 MUM1L1Q5H9M0 696 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 TTBK2Q6IQ55 1244 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 BTNL9Q6UXG8 535 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 ANKRD33Q7Z3H0 272 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 EXOC6Q8TAG9 804 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 UPF3AQ9H1J1 476 aaKnown RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 RANBP17Q9H2T7 1088 aaKnown RBP18.62■□□□□ 0.57
CPSF1-205ENST00000531042 SPC25Q9HBM1 224 aa18.62■□□□□ 0.57
CPSF1-205ENST00000531042 ASB14A6NK59 587 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 KIAA0355O15063 1070 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 ICAM1P05362 532 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 PCP11498 1178 aaKnown RBP18.61■□□□□ 0.57
CPSF1-205ENST00000531042 SLC16A2P36021 539 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 MFAP1P55081 439 aaKnown RBP18.61■□□□□ 0.57
CPSF1-205ENST00000531042 C9orf50Q5SZB4 431 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 AKNAD1Q5T1N1 836 aa18.61■□□□□ 0.57
CPSF1-205ENST00000531042 FAM109BQ6ICB4 259 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms