RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 ADAMTS10Q9H324 1103 aa7.24□□□□□ -1.25
CD44-230ENST00000528922 SLAMF8Q9P0V8 285 aa7.24□□□□□ -1.25
CD44-230ENST00000528922 SMARCA2P51531 1590 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 LMTK3Q96Q04 1460 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 TBX1O43435 398 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 KCNH1O95259 989 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 RNASE1P07998 156 aaKnown RBP7.23□□□□□ -1.25
CD44-230ENST00000528922 ZNF792Q3KQV3 632 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 CWF19L1Q69YN2 538 aaKnown RBP7.23□□□□□ -1.25
CD44-230ENST00000528922 SPATC1Q76KD6 591 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 LRP10Q7Z4F1 713 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 ZNF227Q86WZ6 799 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 FCRL3Q96P31 734 aaPredicted RBP7.23□□□□□ -1.25
CD44-230ENST00000528922 ALPK1Q96QP1 1244 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 SRPK1Q96SB4 655 aaKnown RBP7.23□□□□□ -1.25
CD44-230ENST00000528922 EBF1Q9UH73 591 aa7.23□□□□□ -1.25
CD44-230ENST00000528922 SSU72P8A0A1W2PR75 194 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 NOP56O00567 594 aaKnown RBP7.22□□□□□ -1.25
CD44-230ENST00000528922 RPL10P27635 214 aaKnown RBP7.22□□□□□ -1.25
CD44-230ENST00000528922 POU4F1Q01851 419 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 BMS1Q14692 1282 aaKnown RBP7.22□□□□□ -1.25
CD44-230ENST00000528922 DPY19L1Q2PZI1 675 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 TRIM59Q8IWR1 403 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 ZSWIM4Q9H7M6 989 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 C19orf73Q9NVV2 129 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 LRP2BPQ9P2M1 347 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 ZMYM5Q9UJ78 669 aa7.22□□□□□ -1.25
CD44-230ENST00000528922 CDK11AQ9UQ88 783 aaPredicted RBP7.22□□□□□ -1.25
CD44-230ENST00000528922 A0A1W2PQU0 124 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 CAPNS1P04632 268 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 CD3EP07766 207 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 GSTM1P09488 218 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 ZGLP1P0C6A0 271 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 IFNGR1P15260 489 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 GRB10Q13322 594 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 GTF2IRD2BQ6EKJ0 949 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 WAPLQ7Z5K2 1190 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 GTF2IRD2Q86UP8 949 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 G6PC3Q9BUM1 346 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 PIF1Q9H611 641 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 AP5S1Q9NUS5 200 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 PFDN2Q9UHV9 154 aa7.21□□□□□ -1.26
CD44-230ENST00000528922 GPR55Q9Y2T6 319 aaPredicted RBP7.21□□□□□ -1.26
CD44-230ENST00000528922 AURKAO14965 403 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 DIAPH1O60610 1272 aaKnown RBP7.2□□□□□ -1.26
CD44-230ENST00000528922 NOP2P46087 812 aaKnown RBP7.2□□□□□ -1.26
CD44-230ENST00000528922 AMPD2Q01433 879 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 MTERF2Q49AM1 385 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 POMZP3Q6PJE2 187 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 NBPF11Q86T75 865 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 BTN2A2Q8WVV5 523 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 LINC01599Q8WXQ3 324 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 DNAJC7Q99615 494 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 CDADC1Q9BWV3 514 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 TMEM59LQ9UK28 342 aa7.2□□□□□ -1.26
CD44-230ENST00000528922 STXBP3O00186 592 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 GRIA2P42262 883 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 CEBPAP49715 358 aaPredicted RBP7.19□□□□□ -1.26
CD44-230ENST00000528922 HK2P52789 917 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 PPP2R2AP63151 447 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 CYP4F3Q08477 520 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 CBLL1Q75N03 491 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 TMEM52Q8NDY8 209 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 ZNF669Q96BR6 464 aaPredicted RBP7.19□□□□□ -1.26
CD44-230ENST00000528922 SGSM3Q96HU1 749 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 RC3H2Q9HBD1 1191 aaKnown RBP7.19□□□□□ -1.26
CD44-230ENST00000528922 ADGRE2Q9UHX3 823 aa7.19□□□□□ -1.26
CD44-230ENST00000528922 AGRPO00253 132 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 SF1Q15637 639 aaKnown RBP7.18□□□□□ -1.26
CD44-230ENST00000528922 NFE2L2Q16236 605 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 CRACR2BQ8N4Y2 399 aaPredicted RBP7.18□□□□□ -1.26
CD44-230ENST00000528922 SPATA9Q9BWV2 254 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 ARHGEF4Q9NR80 690 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 ERVK13-1Q9NX77 482 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 CTNND2Q9UQB3 1225 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 ARHGEF11O15085 1522 aa7.18□□□□□ -1.26
CD44-230ENST00000528922 IQCA1LA6NCM1 817 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 C2orf71A6NGG8 1288 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 FGF10O15520 208 aaPredicted RBP7.17□□□□□ -1.26
CD44-230ENST00000528922 GDNFP39905 211 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 ERVFC1P60507 584 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 SSRP1Q08945 709 aaKnown RBP7.17□□□□□ -1.26
CD44-230ENST00000528922 IFRD2Q12894 506 aaPredicted RBP7.17□□□□□ -1.26
CD44-230ENST00000528922 CYB5RLQ6IPT4 315 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 LILRB2Q8N423 598 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 MAP6Q96JE9 813 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 HHIPL1Q96JK4 782 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 NKX2-4Q9H2Z4 354 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 SP110Q9HB58 689 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 CYP26B1Q9NR63 512 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 NESP48681 1621 aa7.17□□□□□ -1.26
CD44-230ENST00000528922 ADCY3O60266 1144 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 SCRN1Q12765 414 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 RCSD1Q6JBY9 416 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 COPS5Q92905 334 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 FCRL2Q96LA5 508 aaPredicted RBP7.16□□□□□ -1.26
CD44-230ENST00000528922 GPRC5CQ9NQ84 441 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 BACE2Q9Y5Z0 518 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 KDM2BQ8NHM5 1336 aa7.16□□□□□ -1.26
CD44-230ENST00000528922 KIF21AQ7Z4S6 1674 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms