RNA–Protein interactions for RNA: ENST00000525854.5

HIF3A-209, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-209ENST00000525854 ESR2Q92731 530 aa13.71□□□□□ -0.21
HIF3A-209ENST00000525854 CHMP4CQ96CF2 233 aa13.71□□□□□ -0.21
HIF3A-209ENST00000525854 FAM184BQ9ULE4 1060 aa13.71□□□□□ -0.21
HIF3A-209ENST00000525854 MTMR7Q9Y216 660 aa13.71□□□□□ -0.21
HIF3A-209ENST00000525854 TAL1P17542 331 aaPredicted RBP13.7□□□□□ -0.22
HIF3A-209ENST00000525854 MAGEA10P43363 369 aaPredicted RBP13.7□□□□□ -0.22
HIF3A-209ENST00000525854 TBC1D10CQ8IV04 446 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 AGBL1Q96MI9 1066 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 TMEM47Q9BQJ4 181 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 RNF146Q9NTX7 359 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 PRKAG2Q9UGJ0 569 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 CTNNA3Q9UI47 895 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 PRR12Q9ULL5 1215 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 ALPK3Q96L96 1907 aa13.7□□□□□ -0.22
HIF3A-209ENST00000525854 ZNF536O15090 1300 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 ZNFX1Q9P2E3 1918 aaKnown RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 POTEB2H3BUK9 544 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 SNAI1O95863 264 aaPredicted RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 ALAS1P13196 640 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 ADCYAP1R1P41586 468 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 RTP1P59025 263 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 CCDC178Q5BJE1 867 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 CCDC174Q6PII3 467 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 BTNL9Q6UXG8 535 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 SLC39A5Q6ZMH5 540 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 TRERF1Q96PN7 1200 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 LBHD1Q9BQE6 289 aaPredicted RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 DSCC1Q9BVC3 393 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 ABHD16BQ9H3Z7 469 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 A1CFQ9NQ94 594 aaKnown RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 ZHX1Q9UKY1 873 aaPredicted RBP13.69□□□□□ -0.22
HIF3A-209ENST00000525854 PNMA2Q9UL42 364 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 CCPG1Q9ULG6 757 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 PHF24Q9UPV7 400 aa13.69□□□□□ -0.22
HIF3A-209ENST00000525854 PGK1P00558 417 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 ICAM1P05362 532 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 ACVR2BQ13705 512 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 IMMTQ16891 758 aaKnown RBP13.68□□□□□ -0.22
HIF3A-209ENST00000525854 SYDE2Q5VT97 1194 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 C1orf53Q5VUE5 145 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 IQCA1Q86XH1 822 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 DGKHQ86XP1 1220 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 UBE2OQ9C0C9 1292 aaKnown RBP13.68□□□□□ -0.22
HIF3A-209ENST00000525854 RANBP17Q9H2T7 1088 aaKnown RBP13.68□□□□□ -0.22
HIF3A-209ENST00000525854 ATP11BQ9Y2G3 1177 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 FRMPD3Q5JV73 1810 aa13.68□□□□□ -0.22
HIF3A-209ENST00000525854 RANBP2P49792 3224 aaKnown RBP13.67□□□□□ -0.22
HIF3A-209ENST00000525854 ASB14A6NK59 587 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 DUSP11O75319 330 aaKnown RBP13.67□□□□□ -0.22
HIF3A-209ENST00000525854 PDHBP11177 359 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 SLC16A2P36021 539 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 SNX17Q15036 470 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 TTC22Q5TAA0 569 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 ARMCX2Q7L311 632 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 RASGRP2Q7LDG7 609 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 TDHQ8IZJ6 230 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 FAM133AQ8N9E0 248 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 FERMT2Q96AC1 680 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 TSEN34Q9BSV6 310 aaKnown RBP13.67□□□□□ -0.22
HIF3A-209ENST00000525854 SPC25Q9HBM1 224 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 GPCPD1Q9NPB8 672 aa13.67□□□□□ -0.22
HIF3A-209ENST00000525854 NEDD4P46934 1319 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 FRMPD2Q68DX3 1309 aaPredicted RBP13.66□□□□□ -0.22
HIF3A-209ENST00000525854 MOXD2PA6NHM9 499 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 ADAMTS4O75173 837 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 PDE4AP27815 886 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 SNAP25P60880 206 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 MDM2Q00987 491 aaPredicted RBP13.66□□□□□ -0.22
HIF3A-209ENST00000525854 CNTN2Q02246 1040 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 ZNF543Q08ER8 600 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 CCDC144BQ3MJ40 725 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 TRIM60Q495X7 471 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 GPATCH4Q5T3I0 446 aaKnown RBP13.66□□□□□ -0.22
HIF3A-209ENST00000525854 TTBK2Q6IQ55 1244 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 CCDC144CPQ8IYA2 1237 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 RUFY2Q8WXA3 655 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 FGD4Q96M96 766 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 KRT23Q9C075 422 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 CNNM2Q9H8M5 875 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 CYP39A1Q9NYL5 469 aa13.66□□□□□ -0.22
HIF3A-209ENST00000525854 RAD50Q92878 1312 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 SYNRGQ9UMZ2 1314 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 PLXNA1Q9UIW2 1896 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 KDM4AO75164 1064 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 SNHG28P0DPA3 235 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 IRX6P78412 446 aaPredicted RBP13.65□□□□□ -0.22
HIF3A-209ENST00000525854 MUM1L1Q5H9M0 696 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 NSMFQ6X4W1 530 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 PCSK9Q8NBP7 692 aaKnown RBP13.65□□□□□ -0.22
HIF3A-209ENST00000525854 NUP133Q8WUM0 1156 aa13.65□□□□□ -0.22
HIF3A-209ENST00000525854 LENG1Q96BZ8 264 aaPredicted RBP13.65□□□□□ -0.22
HIF3A-209ENST00000525854 A0A1W2PQ45 241 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 A0A1W2PQY0 241 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 SOWAHBA6NEL2 793 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 B4E1Z4 1266 aa13.64□□□□□ -0.23
HIF3A-209ENST00000525854 C6orf222P0C671 652 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 GSPT1P15170 499 aaKnown RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 CST5P28325 142 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-209ENST00000525854 ACLYP53396 1101 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms