RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 DEPDC7Q96QD5 511 aa6.72□□□□□ -1.33
CD44-215ENST00000525241 AP5S1Q9NUS5 200 aa6.72□□□□□ -1.33
CD44-215ENST00000525241 SNTG2Q9NY99 539 aa6.72□□□□□ -1.33
CD44-215ENST00000525241 USP35Q9P2H5 1018 aa6.72□□□□□ -1.33
CD44-215ENST00000525241 CTNND2Q9UQB3 1225 aa6.72□□□□□ -1.33
CD44-215ENST00000525241 A0A1W2PQU0 124 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 AURKAO14965 403 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 GSTM1P09488 218 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 GDNFP39905 211 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 CEBPAP49715 358 aaPredicted RBP6.71□□□□□ -1.34
CD44-215ENST00000525241 HK2P52789 917 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 AMPD2Q01433 879 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 DPY19L1Q2PZI1 675 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 SPATC1Q76KD6 591 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 CRACR2BQ8N4Y2 399 aaPredicted RBP6.71□□□□□ -1.34
CD44-215ENST00000525241 ZNF669Q96BR6 464 aaPredicted RBP6.71□□□□□ -1.34
CD44-215ENST00000525241 CCDC120Q96HB5 630 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 CDADC1Q9BWV3 514 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 LRP2BPQ9P2M1 347 aa6.71□□□□□ -1.34
CD44-215ENST00000525241 GPR55Q9Y2T6 319 aaPredicted RBP6.71□□□□□ -1.34
CD44-215ENST00000525241 STXBP3O00186 592 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 ENDOUP21128 410 aaKnown RBP6.7□□□□□ -1.34
CD44-215ENST00000525241 ERVFC1P60507 584 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 CCDC144BQ3MJ40 725 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 GTF2IRD2BQ6EKJ0 949 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 GTF2IRD2Q86UP8 949 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 TMEM52Q8NDY8 209 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 SGSM3Q96HU1 749 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 MAP6Q96JE9 813 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 HHIPL1Q96JK4 782 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 FCRL2Q96LA5 508 aaPredicted RBP6.7□□□□□ -1.34
CD44-215ENST00000525241 SRPK1Q96SB4 655 aaKnown RBP6.7□□□□□ -1.34
CD44-215ENST00000525241 SP110Q9HB58 689 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 ERVK13-1Q9NX77 482 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 ZMYM5Q9UJ78 669 aa6.7□□□□□ -1.34
CD44-215ENST00000525241 FGF10O15520 208 aaPredicted RBP6.69□□□□□ -1.34
CD44-215ENST00000525241 PPP2R2AP63151 447 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 CYP4F3Q08477 520 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 DUSP4Q13115 394 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 MTERF2Q49AM1 385 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 RCSD1Q6JBY9 416 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 DPH6Q7L8W6 267 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 PDZD8Q8NEN9 1154 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 FLAD1Q8NFF5 587 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 BTN2A2Q8WVV5 523 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 SYTL4Q96C24 671 aaPredicted RBP6.69□□□□□ -1.34
CD44-215ENST00000525241 NKX2-4Q9H2Z4 354 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 CYP26B1Q9NR63 512 aa6.69□□□□□ -1.34
CD44-215ENST00000525241 CDK11AQ9UQ88 783 aaPredicted RBP6.69□□□□□ -1.34
CD44-215ENST00000525241 LOC100996750A0A140TA64 210 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 IQCA1LA6NCM1 817 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 C2orf71A6NGG8 1288 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 AGRPO00253 132 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 HPXP02790 462 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 GRIA2P42262 883 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 BMS1Q14692 1282 aaKnown RBP6.68□□□□□ -1.34
CD44-215ENST00000525241 ATG4DQ86TL0 474 aaPredicted RBP6.68□□□□□ -1.34
CD44-215ENST00000525241 COPS5Q92905 334 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 KRTAP4-6Q9BYQ5 205 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 ZSWIM4Q9H7M6 989 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 BACE2Q9Y5Z0 518 aa6.68□□□□□ -1.34
CD44-215ENST00000525241 NOTOA8MTQ0 251 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 FADS2P1A8MWK0 482 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 DIAPH1O60610 1272 aaKnown RBP6.67□□□□□ -1.34
CD44-215ENST00000525241 KIR2DL1P43626 348 aaPredicted RBP6.67□□□□□ -1.34
CD44-215ENST00000525241 KIR2DL2P43627 348 aaPredicted RBP6.67□□□□□ -1.34
CD44-215ENST00000525241 SF1Q15637 639 aaKnown RBP6.67□□□□□ -1.34
CD44-215ENST00000525241 XP32Q5T750 250 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 EEF1DP3Q658K8 133 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 ANKS4BQ8N8V4 417 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 PTCHD1Q96NR3 888 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 DNAJC7Q99615 494 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 SPATA9Q9BWV2 254 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 PIF1Q9H611 641 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 ARHGEF4Q9NR80 690 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 TNFRSF10DQ9UBN6 386 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 PFDN2Q9UHV9 154 aa6.67□□□□□ -1.34
CD44-215ENST00000525241 ADCY3O60266 1144 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 IGSF3O75054 1194 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 USP2O75604 605 aaPredicted RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 EFEMP2O95967 443 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 SCG5P05408 212 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 ITGB5P18084 799 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 HOXC12P31275 282 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 TRHRP34981 398 aaPredicted RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 SEPHS1P49903 392 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 IRAK1P51617 712 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 CHRNEQ04844 493 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 SSRP1Q08945 709 aaKnown RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 SCRN1Q12765 414 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 IFRD2Q12894 506 aaPredicted RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 HSP90AA2PQ14568 343 aaPredicted RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 NR0B2Q15466 257 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 NFE2L2Q16236 605 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 FYB2Q5VWT5 728 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 SPPL2CQ8IUH8 684 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 LRRC47Q8N1G4 583 aaKnown RBP6.66□□□□□ -1.34
CD44-215ENST00000525241 OXR1Q8N573 874 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 C19orf44Q9H6X5 657 aa6.66□□□□□ -1.34
CD44-215ENST00000525241 FITM1A5D6W6 292 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms