RNA–Protein interactions for RNA: ENST00000523952.5

PTPN12-216, Transcript of protein tyrosine phosphatase, non-receptor type 12, human

TSL 4

Gene PTPN12, Length 500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN12-216	ENST00000523952	AKR1B1	P15121	316 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	CCL23	P55773	120 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	CCDC144B	Q3MJ40	725 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	TMEM67	Q5HYA8	995 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	FAM83B	Q5T0W9	1011 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	CLUAP1	Q96AJ1	413 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	DYNLL2	Q96FJ2	89 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	RIOK1	Q9BRS2	568 aa	Known RBP	11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	ANTXR1	Q9H6X2	564 aa		11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN12-216	ENST00000523952	ZEB2	O60315	1214 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	CYP2D6	P10635	497 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	ACTN1	P12814	892 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	EEF2	P13639	858 aa	Known RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	MYOG	P15173	224 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	ATP2A2	P16615	1042 aa	Known RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	RARS	P54136	660 aa	Known RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	GJA9	P57773	515 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	MAMDC4	Q6UXC1	1216 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	AACS	Q86V21	672 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	CPXCR1	Q8N123	301 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	HLA-C	Q95604	372 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	SLF1	Q9BQI6	1058 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	AP5M1	Q9H0R1	490 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	UPF3A	Q9H1J1	476 aa	Known RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	KANSL2	Q9H9L4	492 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	CERS4	Q9HA82	394 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	ZNF214	Q9UL59	606 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	ADAMTS5	Q9UNA0	930 aa		11.21	□□□□□ -0.61
PTPN12-216	ENST00000523952	XIRP2	A4UGR9	3374 aa		11.21	□□□□□ -0.62
PTPN12-216	ENST00000523952	NLRC5	Q86WI3	1866 aa		11.21	□□□□□ -0.62
PTPN12-216	ENST00000523952	BRWD1	Q9NSI6	2320 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ZNF532	Q9HCE3	1301 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ZBED4	O75132	1171 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	CABYR	O75952	493 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	CD4	P01730	458 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	TRIM27	P14373	513 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	PDE6A	P16499	860 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	IRX5	P78411	483 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ATP8B2	P98198	1209 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	BEX3	Q00994	111 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	TNFAIP2	Q03169	654 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ITGA7	Q13683	1181 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	CXCL17	Q6UXB2	119 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ARMCX2	Q7L311	632 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	ALYREF	Q86V81	257 aa	Known RBP	11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	SSH3	Q8TE77	659 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	EAF2	Q96CJ1	260 aa	Predicted RBP	11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	BCL11A	Q9H165	835 aa		11.2	□□□□□ -0.62
PTPN12-216	ENST00000523952	MYH7B	A7E2Y1	1941 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	LCT	P09848	1927 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	UMODL1	Q5DID0	1318 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	FAM86C2P	A6NEL3	165 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	KIF28P	B7ZC32	967 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	RFXAP	O00287	272 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	GPR37L1	O60883	481 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	CA3	P07451	260 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	CDK8	P49336	464 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	ERC1	Q8IUD2	1116 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	LCORL	Q8N3X6	602 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	PRPF38A	Q8NAV1	312 aa	Known RBP	11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	TET1	Q8NFU7	2136 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	ARNTL2	Q8WYA1	636 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	DNAJC2	Q99543	621 aa	Known RBP	11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	SEZ6L	Q9BYH1	1024 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	ARMT1	Q9H993	441 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	ATP8A2	Q9NTI2	1148 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	FBXO40	Q9UH90	709 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	ISY1	Q9ULR0	285 aa	Known RBP	11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	MTCH2	Q9Y6C9	303 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	MYH6	P13533	1939 aa		11.19	□□□□□ -0.62
PTPN12-216	ENST00000523952	DNAJC25-GNG10	A0A024R161	153 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	PFKM	P08237	780 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	FSCN1	Q16658	493 aa	Known RBP	11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	CSPP1	Q1MSJ5	1256 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	DEFB128	Q7Z7B8	93 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	TLK2	Q86UE8	772 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	SIAH1	Q8IUQ4	282 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	CCDC144CP	Q8IYA2	1237 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	TRMT2A	Q8IZ69	625 aa	Known RBP	11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	KIFC2	Q96AC6	838 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	SCLY	Q96I15	445 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	UIMC1	Q96RL1	719 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	NUP88	Q99567	741 aa	Predicted RBP	11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	NOC4L	Q9BVI4	516 aa	Known RBP	11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	C1orf115	Q9H7X2	142 aa		11.18	□□□□□ -0.62
PTPN12-216	ENST00000523952	SMIM22	K7EJ46	135 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	GOLIM4	O00461	696 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	ADCY6	O43306	1168 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	TLL1	O43897	1013 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	MBD4	O95243	580 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	REPS2	Q8NFH8	660 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	SLC9A7	Q96T83	725 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	TRPV6	Q9H1D0	765 aa		11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	RAVER2	Q9HCJ3	691 aa	Known RBP	11.17	□□□□□ -0.62
PTPN12-216	ENST00000523952	HOMER2	Q9NSB8	354 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms