RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	PNMA2	Q9UL42	364 aa		28.92	■■■□□ 2.22
PVT1-204	ENST00000517525	AGBL1	Q96MI9	1066 aa		28.91	■■■□□ 2.22
PVT1-204	ENST00000517525	ZKSCAN3	Q9BRR0	538 aa		28.91	■■■□□ 2.22
PVT1-204	ENST00000517525	ACAD9	Q9H845	621 aa		28.91	■■■□□ 2.22
PVT1-204	ENST00000517525	ICAM1	P05362	532 aa		28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	COL6A1	P12109	1028 aa		28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	PNMA1	Q8ND90	353 aa		28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	DIS3L	Q8TF46	1054 aa	Known RBP	28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	MTMR7	Q9Y216	660 aa		28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	SYNGAP1	Q96PV0	1343 aa		28.9	■■■□□ 2.22
PVT1-204	ENST00000517525	TRDN	Q13061	729 aa		28.89	■■■□□ 2.22
PVT1-204	ENST00000517525	ANKRD35	Q8N283	1001 aa		28.89	■■■□□ 2.22
PVT1-204	ENST00000517525	CHMP4C	Q96CF2	233 aa		28.89	■■■□□ 2.22
PVT1-204	ENST00000517525	RNF146	Q9NTX7	359 aa		28.89	■■■□□ 2.22
PVT1-204	ENST00000517525	TNKS	O95271	1327 aa		28.89	■■■□□ 2.21
PVT1-204	ENST00000517525	SEC23A	Q15436	765 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	CCDC136	Q96JN2	1154 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	TRERF1	Q96PN7	1200 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	ESYT1	Q9BSJ8	1104 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	UBAC1	Q9BSL1	405 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	C11orf49	Q9H6J7	331 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	KAT14	Q9H8E8	782 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	GPCPD1	Q9NPB8	672 aa		28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	FRMPD2	Q68DX3	1309 aa	Predicted RBP	28.88	■■■□□ 2.21
PVT1-204	ENST00000517525	CNGA1	P29973	690 aa		28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	SLC16A2	P36021	539 aa		28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	FAM133A	Q8N9E0	248 aa		28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	DPF3	Q92784	378 aa		28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	FGD4	Q96M96	766 aa		28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	LSG1	Q9H089	658 aa	Known RBP	28.87	■■■□□ 2.21
PVT1-204	ENST00000517525	SLC4A3	P48751	1232 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	PRAMEF19	Q5SWL8	479 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	CCDC174	Q6PII3	467 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	KIAA1211	Q6ZU35	1233 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	A1CF	Q9NQ94	594 aa	Known RBP	28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	CCPG1	Q9ULG6	757 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	PFAS	O15067	1338 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525	WDR19	Q8NEZ3	1342 aa		28.86	■■■□□ 2.21
PVT1-204	ENST00000517525		E7EWF7	191 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	ZNF865	P0CJ78	1059 aa	Predicted RBP	28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	ALAS1	P13196	640 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	ASPRV1	Q53RT3	343 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	CYB5R4	Q7L1T6	521 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	HOMER2	Q9NSB8	354 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	RBM8A	Q9Y5S9	174 aa	Known RBP	28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	NR2E3	Q9Y5X4	410 aa		28.85	■■■□□ 2.21
PVT1-204	ENST00000517525	SNAI1	O95863	264 aa	Predicted RBP	28.84	■■■□□ 2.21
PVT1-204	ENST00000517525	SNAP25	P60880	206 aa		28.84	■■■□□ 2.21
PVT1-204	ENST00000517525	ARRDC4	Q8NCT1	418 aa		28.84	■■■□□ 2.21
PVT1-204	ENST00000517525	NCOA7	Q8NI08	942 aa		28.84	■■■□□ 2.21
PVT1-204	ENST00000517525	CNPY2	Q9Y2B0	182 aa		28.84	■■■□□ 2.21
PVT1-204	ENST00000517525	CEP290	O15078	2479 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	PLXNA1	Q9UIW2	1896 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	POTEB2	H3BUK9	544 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	DNM1L	O00429	736 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	IFIT1B	Q5T764	474 aa	Known RBP	28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	SKAP1	Q86WV1	359 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	MAF1	Q9H063	256 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525	TAF6L	Q9Y6J9	622 aa		28.83	■■■□□ 2.21
PVT1-204	ENST00000517525		H0YGN5	161 aa		28.82	■■■□□ 2.2
PVT1-204	ENST00000517525	STOX1	Q6ZVD7	989 aa		28.82	■■■□□ 2.2
PVT1-204	ENST00000517525	MTA3	Q9BTC8	594 aa		28.82	■■■□□ 2.2
PVT1-204	ENST00000517525	CYP39A1	Q9NYL5	469 aa		28.82	■■■□□ 2.2
PVT1-204	ENST00000517525	TAL1	P17542	331 aa	Predicted RBP	28.81	■■■□□ 2.2
PVT1-204	ENST00000517525	MUM1L1	Q5H9M0	696 aa		28.81	■■■□□ 2.2
PVT1-204	ENST00000517525	RALYL	Q86SE5	291 aa	Known RBP	28.81	■■■□□ 2.2
PVT1-204	ENST00000517525	EVI5	O60447	810 aa		28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	NEFL	P07196	543 aa		28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	PARP1	P09874	1014 aa	Known RBP	28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	AKR1A1	P14550	325 aa		28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	NECTIN1	Q15223	517 aa		28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	ABHD16B	Q9H3Z7	469 aa		28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	28.8	■■■□□ 2.2
PVT1-204	ENST00000517525	LOC102724159	A0A0B4J2E5	919 aa		28.79	■■■□□ 2.2
PVT1-204	ENST00000517525	GOLGA8H	P0CJ92	632 aa		28.79	■■■□□ 2.2
PVT1-204	ENST00000517525	CNTN2	Q02246	1040 aa		28.79	■■■□□ 2.2
PVT1-204	ENST00000517525	PWP2	Q15269	919 aa	Known RBP	28.79	■■■□□ 2.2
PVT1-204	ENST00000517525	MB21D2	Q8IYB1	491 aa	Predicted RBP	28.79	■■■□□ 2.2
PVT1-204	ENST00000517525	FRMPD3	Q5JV73	1810 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	SOWAHB	A6NEL2	793 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	ASB14	A6NK59	587 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	RARB	P10826	455 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	SART3	Q15020	963 aa	Known RBP	28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	ERICH6B	Q5W0A0	696 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	ARMCX2	Q7L311	632 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	RGS22	Q8NE09	1264 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	CLEC4D	Q8WXI8	215 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	KATNBL1	Q9H079	304 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	FAM184B	Q9ULE4	1060 aa		28.78	■■■□□ 2.2
PVT1-204	ENST00000517525	IFIT3	O14879	490 aa	Known RBP	28.77	■■■□□ 2.2
PVT1-204	ENST00000517525	ACVR2B	Q13705	512 aa		28.77	■■■□□ 2.2
PVT1-204	ENST00000517525	MORC4	Q8TE76	937 aa		28.77	■■■□□ 2.2
PVT1-204	ENST00000517525	UBA5	Q9GZZ9	404 aa		28.77	■■■□□ 2.2
PVT1-204	ENST00000517525	ERICH2	A1L162	156 aa		28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	PALM3	A6NDB9	673 aa	Predicted RBP	28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	CDC45	O75419	566 aa		28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	ANTXR2	P58335	489 aa		28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	LRRC41	Q15345	812 aa		28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	CASC1	Q6TDU7	716 aa		28.76	■■■□□ 2.19
PVT1-204	ENST00000517525	CCDC144CP	Q8IYA2	1237 aa		28.76	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms