RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, human

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-222	ENST00000515609	CLEC10A	Q8IUN9	316 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	CCAR1	Q8IX12	1150 aa	Known RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	GPT2	Q8TD30	523 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	RAB34	Q9BZG1	259 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	GZF1	Q9H116	711 aa	Predicted RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	NUP62CL	Q9H1M0	184 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	MAP3K20	Q9NYL2	800 aa	Known RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	MRPL11	Q9Y3B7	192 aa	Known RBP	10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	RABGAP1	Q9Y3P9	1069 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609	CLIC4	Q9Y696	253 aa		10.82	□□□□□ -0.68
TPM3-222	ENST00000515609		A0A1W2PRG0	241 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	GOLGA6L3	A6NEY3	463 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ZBED4	O75132	1171 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	VEGFA	P15692	232 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	PTPRA	P18433	802 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	SLC16A2	P36021	539 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	RRP1B	Q14684	758 aa	Known RBP	10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	QRICH1	Q2TAL8	776 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ZSCAN23	Q3MJ62	389 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	FAM83B	Q5T0W9	1011 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	NEK8	Q86SG6	692 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	MCF2L2	Q86YR7	1114 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ANKRD13A	Q8IZ07	590 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ACER1	Q8TDN7	264 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ANP32B	Q92688	251 aa	Known RBP	10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	TNFRSF25	Q93038	417 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	C12orf42	Q96LP6	360 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	TIGD1	Q96MW7	591 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	SLF1	Q9BQI6	1058 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	TNMD	Q9H2S6	317 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	TAF1D	Q9H5J8	278 aa	Predicted RBP	10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	USP25	Q9UHP3	1055 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	PRR12	Q9ULL5	1215 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	PCDHA7	Q9UN72	937 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	SRPRB	Q9Y5M8	271 aa	Known RBP	10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	MYH15	Q9Y2K3	1946 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	ABCB11	O95342	1321 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	MYPN	Q86TC9	1320 aa		10.81	□□□□□ -0.68
TPM3-222	ENST00000515609	SPDYE3	A6NKU9	549 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	GADD45B	O75293	160 aa	Predicted RBP	10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PTPRE	P23469	700 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PRPH	P41219	470 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	ECE1	P42892	770 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	FKBP1B	P68106	108 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PABPC4	Q13310	644 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PTPA	Q15257	358 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	NPY5R	Q15761	445 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	MAP3K11	Q16584	847 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	TTBK2	Q6IQ55	1244 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	SPICE1	Q8N0Z3	855 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	FSIP1	Q8NA03	581 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	OXER1	Q8TDS5	423 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	SDF4	Q9BRK5	362 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	TANGO6	Q9C0B7	1094 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	RANBP17	Q9H2T7	1088 aa	Known RBP	10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	HOXC10	Q9NYD6	342 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PCDHA6	Q9UN73	950 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	PCDHA8	Q9Y5H6	950 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	STK24	Q9Y6E0	443 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	ZHX2	Q9Y6X8	837 aa		10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	ASTN2	O75129	1339 aa	Predicted RBP	10.8	□□□□□ -0.68
TPM3-222	ENST00000515609	UBE2Q2L	H0YL09	131 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609		M0R2N6	131 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	PIK3CD	O00329	1044 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	CXCL11	O14625	94 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	CCDC192	P0DO97	292 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	ATP2B1	P20020	1258 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	INPP5B	P32019	993 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	LONP1	P36776	959 aa	Known RBP	10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	USP11	P51784	963 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	OAZ1	P54368	228 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	JAG1	P78504	1218 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	ATP2C1	P98194	919 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	PPAT	Q06203	517 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	SPP2	Q13103	211 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	MTMR2	Q13614	643 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	TTLL12	Q14166	644 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	EAPP	Q56P03	285 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	MOXD1	Q6UVY6	613 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	ERO1B	Q86YB8	467 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	KIFC2	Q96AC6	838 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	PGBD1	Q96JS3	809 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	AK8	Q96MA6	479 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	DACT1	Q9NYF0	836 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	CLEC11A	Q9Y240	323 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	TCHH	Q07283	1943 aa		10.79	□□□□□ -0.68
TPM3-222	ENST00000515609	DOCK1	Q14185	1865 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	FAM237A	A0A1B0GTK4	181 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L15	C9J2P7	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L13	C9JLJ4	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L11	C9JVI0	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L18	D6R9N7	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L22	D6RA61	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L17	D6RBQ6	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L19	D6RCP7	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP17L20	D6RJB6	530 aa		10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	USP2	O75604	605 aa	Predicted RBP	10.78	□□□□□ -0.68
TPM3-222	ENST00000515609	FLOT1	O75955	427 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms