RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 TUBB4BP68371 445 aa8.4□□□□□ -1.06
CLIP1-205ENST00000514271 DNTTIP2Q5QJE6 756 aaKnown RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 JAKMIP3Q5VZ66 844 aa8.4□□□□□ -1.06
CLIP1-205ENST00000514271 PAPD7Q5XG87 772 aaKnown RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 SGMS1Q86VZ5 419 aa8.4□□□□□ -1.06
CLIP1-205ENST00000514271 AMOTL1Q8IY63 956 aa8.4□□□□□ -1.06
CLIP1-205ENST00000514271 NSUN4Q96CB9 384 aaKnown RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 ADD3Q9UEY8 706 aaKnown RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 ZBTB12Q9Y330 459 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 RRP15Q9Y3B9 282 aaKnown RBP8.4□□□□□ -1.06
CLIP1-205ENST00000514271 TARSL2A2RTX5 802 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 SRRM3A6NNA2 597 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 RNF225M0QZC1 329 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 CEP57L1Q8IYX8 460 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 CERS5Q8N5B7 392 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 DHX58Q96C10 678 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 GPR101Q96P66 508 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 TESPA1A2RU30 521 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 VPS37CA5D8V6 355 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 CCP110O43303 1012 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 N4BP1O75113 896 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 MYCNP04198 464 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 ZKSCAN1P17029 563 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 ATP2B1P20020 1258 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 FUT2Q10981 343 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 E2F4Q16254 413 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 RBM26Q5T8P6 1007 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 AENQ8WTP8 325 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 FAM151AQ8WW52 585 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 EDC3Q96F86 508 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 RAI14Q9P0K7 980 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 TBC1D12O60347 775 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 FOXD4Q12950 439 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 MEA1Q16626 185 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 RPAINQ86UA6 219 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 APPBP2Q92624 585 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 CRNKL1Q9BZJ0 848 aaKnown RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 IGSF5Q9NSI5 407 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 IQSEC3Q9UPP2 1182 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-205ENST00000514271 STK24Q9Y6E0 443 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 PASKQ96RG2 1323 aa8.39□□□□□ -1.07
CLIP1-205ENST00000514271 A0A087X0B3 334 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 GOLGA6L9A6NEM1 432 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 MYBP10242 640 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 PCP11498 1178 aaKnown RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ADD2P35612 726 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ZAP70P43403 619 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 APLP1P51693 650 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 SKOR1P84550 965 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 SCARF1Q14162 830 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ICE2Q659A1 982 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 CTR9Q6PD62 1173 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 TSHZ1Q6ZSZ6 1077 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 TRIML1Q8N9V2 468 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 TCEANC2Q96MN5 208 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 CEP89Q96ST8 783 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 NAA15Q9BXJ9 866 aaKnown RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ATP8A2Q9NTI2 1148 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 WWC3Q9ULE0 1092 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 DAGLAQ9Y4D2 1042 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 WNT10BO00744 389 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 RNF113AO15541 343 aaKnown RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ERVK-24P63145 666 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 MECOMQ03112 1051 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 C6orf89Q6UWU4 347 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 KIAA0825Q8IV33 1275 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 PRPF38AQ8NAV1 312 aaKnown RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ZNF507Q8TCN5 953 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 IGDCC4Q8TDY8 1250 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 CARD6Q9BX69 1037 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 EHD4Q9H223 541 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 MYO1AQ9UBC5 1043 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ZNF70Q9UC06 446 aaPredicted RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 GGA2Q9UJY4 613 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 PPP1R3GB7ZBB8 358 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 EPS15P42566 896 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 DPYDQ12882 1025 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 WLSQ5T9L3 541 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 KRBA2Q6ZNG9 492 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 YTHDF3Q7Z739 585 aaKnown RBP8.38□□□□□ -1.07
CLIP1-205ENST00000514271 ZNF287Q9HBT7 754 aa8.38□□□□□ -1.07
CLIP1-205ENST00000514271 CCDC189A1A4V9 331 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 VGLL3A8MV65 326 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 GYPCP04921 128 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 RCAN1P53805 252 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 GYS2P54840 703 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MYL5Q02045 173 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 ANO1Q5XXA6 986 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 ARMC9Q7Z3E5 817 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CEP120Q8N960 986 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 FSIP1Q8NA03 581 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CLIC6Q96NY7 704 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 NMRK2Q9NPI5 230 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 HERC5Q9UII4 1024 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MAN1B1Q9UKM7 699 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 HPCAL4Q9UM19 191 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 RPS6KL1Q9Y6S9 549 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 A0A1B0GVL5 298 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CD44P16070 742 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 PDE6AP16499 860 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms