RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CCDC17Q96LX7 622 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 NUDT12Q9BQG2 462 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 MOV10L1Q9BXT6 1211 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 CTNNA3Q9UI47 895 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 ZNF112Q9UJU3 913 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 PDS5AQ29RF7 1337 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 E7EWF7 191 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 HIP1O00291 1037 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 ZBED4O75132 1171 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 PRKAR2AP13861 404 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 BECN1Q14457 450 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 EGFL6Q8IUX8 553 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 RASEFQ8IZ41 740 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 TBC1D5Q92609 795 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 SH2D4AQ9H788 454 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 PGK1P00558 417 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 INHAP05111 366 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 ADORA2AP29274 412 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 STAT2P52630 851 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 GABPAQ06546 454 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 GPR142Q7Z601 462 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 HHIPL1Q96JK4 782 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 PGBD1Q96JS3 809 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 NCOA5Q9HCD5 579 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 AKAP11Q9UKA4 1901 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 C19orf81C9J6K1 198 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SGSM2O43147 1006 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SEC24BO95487 1268 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 HOXD10P28358 340 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 TMEM132BQ14DG7 1078 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SART3Q15020 963 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 TATDN1Q6P1N9 297 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 STOX1Q6ZVD7 989 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 RNF217Q8TC41 542 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 BRF1Q92994 677 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SLF1Q9BQI6 1058 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 RNF41Q9H4P4 317 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 HOXC10Q9NYD6 342 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 ZMYND8Q9ULU4 1186 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SALL3Q9BXA9 1300 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 PSEN1P49768 467 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 MMP14P50281 582 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 APOBRQ0VD83 1088 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 CREB3L3Q68CJ9 461 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SYNE3Q6ZMZ3 975 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 SPATC1LQ9H0A9 340 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 CCNA1P78396 465 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 BIRC2Q13490 618 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 ANKRD23Q86SG2 305 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 NCOA7Q8NI08 942 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 KCNH4Q9UQ05 1017 aa9.1□□□□□ -0.95
LIMCH1-219ENST00000514096 ARHGEF6Q15052 776 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 C17orf99Q6UX52 265 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 CATSPERGQ6ZRH7 1159 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 GPKOWQ92917 476 aaPredicted RBP eCLIP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 ZSCAN10Q96SZ4 725 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 NBPF3Q9H094 633 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 RNF146Q9NTX7 359 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 RTEL1Q9NZ71 1219 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 SRRDQ9UH36 339 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 TMX2Q9Y320 296 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 TBC1D12O60347 775 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 FAM47CQ5HY64 1035 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 PLEKHH3Q7Z736 793 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 ENAHQ8N8S7 591 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 MMP19Q99542 508 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 PTPN22Q9Y2R2 807 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 TRPM7Q96QT4 1865 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 MYO7AQ13402 2215 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 SLC27A2O14975 620 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 FCER1AP12319 257 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 EIF2AK2P19525 551 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 CALRP27797 417 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 CCND3P30281 292 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 FOXD4L5Q5VV16 416 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 FBXO46Q6PJ61 603 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 SLC30A10Q6XR72 485 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 HEATR3Q7Z4Q2 680 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 NEDD1Q8NHV4 660 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 DIS3LQ8TF46 1054 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 FOXD4L4Q8WXT5 416 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 KIAA1683Q9H0B3 1180 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 MRVI1Q9Y6F6 885 aa9.09□□□□□ -0.95
LIMCH1-219ENST00000514096 ATRNL1Q5VV63 1379 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 KLRF2D3W0D1 207 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PARP1P09874 1014 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 MFSD4BQ5TF39 518 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 SEPT14Q6ZU15 432 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PAWRQ96IZ0 340 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 SENP6Q9GZR1 1112 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 RSPH14Q9UHP6 348 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 PRR12Q9ULL5 1215 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 SLC12A7Q9Y666 1083 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 KLF18A0A0U1RQI7 1052 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 NFIBO00712 420 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 C6orf222P0C671 652 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 CCL5P13501 91 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 MOGSQ13724 837 aa9.08□□□□□ -0.96
LIMCH1-219ENST00000514096 RNF20Q5VTR2 975 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms