RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 HERVK_113Q902F9 699 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 KIFC2Q96AC6 838 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 KIF1BPQ96EK5 621 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 SLC28A3Q9HAS3 691 aa24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 CTDP1Q9Y5B0 961 aaPredicted RBP24.39■■□□□ 1.49
SQSTM1-215ENST00000514093 UMODL1Q5DID0 1318 aa24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 ZBED4O75132 1171 aa24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 FGBP02675 491 aa24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 OTOP2Q7RTS6 562 aa24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 IL27Q8NEV9 243 aa24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 NECAB3Q96P71 396 aaPredicted RBP24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 PUS7LQ9H0K6 701 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-215ENST00000514093 ZBED9Q6R2W3 1325 aa24.37■■□□□ 1.49
SQSTM1-215ENST00000514093 CD4P01730 458 aa24.37■■□□□ 1.49
SQSTM1-215ENST00000514093 RABGGTBP53611 331 aa24.37■■□□□ 1.49
SQSTM1-215ENST00000514093 CCDC144CPQ8IYA2 1237 aa24.37■■□□□ 1.49
SQSTM1-215ENST00000514093 MCM3APO60318 1980 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 CCL23P55773 120 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 UBE3CQ15386 1083 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 CXCL17Q6UXB2 119 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 NOL8Q76FK4 1167 aaKnown RBP24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 MICALL1Q8N3F8 863 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 KATNBL1Q9H079 304 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 NYAP2Q9P242 653 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 CLIP2Q9UDT6 1046 aa24.36■■□□□ 1.49
SQSTM1-215ENST00000514093 CCER2I3L3R5 266 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 ATP2A1O14983 1001 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 MYOGP15173 224 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 RASA1P20936 1047 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 PTGS1P23219 599 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 CNTN2Q02246 1040 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 HIPK3Q9H422 1215 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 MKNK2Q9HBH9 465 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 HOMER2Q9NSB8 354 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 ASTN1O14525 1302 aa24.35■■□□□ 1.49
SQSTM1-215ENST00000514093 GBF1Q92538 1859 aa24.34■■□□□ 1.49
SQSTM1-215ENST00000514093 ATP5JP18859 108 aa24.34■■□□□ 1.49
SQSTM1-215ENST00000514093 HAUS7Q99871 368 aa24.34■■□□□ 1.49
SQSTM1-215ENST00000514093 MTIF3Q9H2K0 278 aaKnown RBP24.34■■□□□ 1.49
SQSTM1-215ENST00000514093 SLC38A10Q9HBR0 1119 aa24.34■■□□□ 1.49
SQSTM1-215ENST00000514093 MINDY4BA8MYZ0 360 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 PLA2G5P39877 138 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 TNFAIP2Q03169 654 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 TFF2Q03403 129 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 TRPV6Q9H1D0 765 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 CHD7Q9P2D1 2997 aa24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 ARPP21Q9UBL0 812 aaPredicted RBP24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 DDX49Q9Y6V7 483 aaKnown RBP24.33■■□□□ 1.49
SQSTM1-215ENST00000514093 TCF20Q9UGU0 1960 aaKnown RBP24.33■■□□□ 1.48
SQSTM1-215ENST00000514093 GREB1LQ9C091 1923 aaPredicted RBP24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 ITGA7Q13683 1181 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 SIRT2Q8IXJ6 389 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 SLC43A3Q8NBI5 491 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 CHST13Q8NET6 341 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 FAM122AQ96E09 287 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 FBXO40Q9UH90 709 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 GRIN2DO15399 1336 aa24.32■■□□□ 1.48
SQSTM1-215ENST00000514093 BDP1A6H8Y1 2624 aa24.31■■□□□ 1.48
SQSTM1-215ENST00000514093 PPP2R2DQ66LE6 453 aa24.31■■□□□ 1.48
SQSTM1-215ENST00000514093 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.31■■□□□ 1.481e-6■■□□□ 14.4
SQSTM1-215ENST00000514093 TSPYL2Q9H2G4 693 aaPredicted RBP24.31■■□□□ 1.48
SQSTM1-215ENST00000514093 XIRP2A4UGR9 3374 aa24.31■■□□□ 1.48
SQSTM1-215ENST00000514093 REV3LO60673 3130 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 BMP1P13497 986 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 NKX3-2P78367 333 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 LRRC47Q8N1G4 583 aaKnown RBP24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 CHMP4CQ96CF2 233 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 STRBPQ96SI9 672 aaKnown RBP24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 NOC4LQ9BVI4 516 aaKnown RBP24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 WNT8AQ9H1J5 351 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 FEM1BQ9UK73 627 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 SLC4A7Q9Y6M7 1214 aa24.3■■□□□ 1.48
SQSTM1-215ENST00000514093 IGKV6D-41A0A0C4DH26 115 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 SOWAHBA6NEL2 793 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 GSG1L2A8MUP6 293 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 DYNC1LI2O43237 492 aaPredicted RBP24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 RAB11FIP3O75154 756 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 PRDM1O75626 825 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 PSMC6P62333 389 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 FSCN1Q16658 493 aaKnown RBP24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 SBK1Q52WX2 424 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 TMEM63BQ5T3F8 832 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 TLK2Q86UE8 772 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 RPAP2Q8IXW5 612 aaPredicted RBP24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 FAM133AQ8N9E0 248 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 CEP95Q96GE4 821 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 SCLYQ96I15 445 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 GNEQ9Y223 722 aaKnown RBP24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 NCOR1O75376 2440 aa24.29■■□□□ 1.48
SQSTM1-215ENST00000514093 ZBBXA8MT70 800 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 RFXAPO00287 272 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 B4GALT4O60513 344 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 KCNQ1P51787 676 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 SKIV2LQ15477 1246 aaKnown RBP24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 ZSCAN25Q6NSZ9 544 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 AP5M1Q9H0R1 490 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 PDGFCQ9NRA1 345 aa24.28■■□□□ 1.48
SQSTM1-215ENST00000514093 ISY1Q9ULR0 285 aaKnown RBP24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms