RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CALM1P0DP23 149 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 CALM2P0DP24 149 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 CALM3P0DP25 149 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 USP14P54578 494 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 ERVK-24P63145 666 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 TUBB4BP68371 445 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 OXER1Q8TDS5 423 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 FBXO2Q9UK22 296 aaPredicted RBP10.78□□□□□ -0.68
VCAN-210ENST00000513960 NID2Q14112 1375 aa10.78□□□□□ -0.68
VCAN-210ENST00000513960 CYP2D7A0A087X1C5 515 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 HNRNPH1P31943 449 aaKnown RBP10.77□□□□□ -0.68
VCAN-210ENST00000513960 KRT2P35908 639 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 KRT31Q15323 416 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 SPA17Q15506 151 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 SH2D3CQ8N5H7 860 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 ENAHQ8N8S7 591 aaPredicted RBP10.77□□□□□ -0.68
VCAN-210ENST00000513960 FAM84BQ96KN1 310 aaPredicted RBP10.77□□□□□ -0.68
VCAN-210ENST00000513960 NLRP3Q96P20 1036 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 BRIP1Q9BX63 1249 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 ABHD10Q9NUJ1 306 aa10.77□□□□□ -0.68
VCAN-210ENST00000513960 RBM28Q9NW13 759 aaKnown RBP10.77□□□□□ -0.68
VCAN-210ENST00000513960 SRPRBQ9Y5M8 271 aaKnown RBP10.77□□□□□ -0.68
VCAN-210ENST00000513960 USP17L12C9JPN9 530 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 USP17L21D6R901 530 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 NF2P35240 595 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 MORC3Q14149 939 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 ODF2Q5BJF6 829 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 RASGRP2Q7LDG7 609 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 POTEDQ86YR6 584 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 TEX2Q8IWB9 1127 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 COG1Q8WTW3 980 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 RIOK1Q9BRS2 568 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 PCP11498 1178 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 CD44P16070 742 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 IRAK1P51617 712 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 COPB1P53618 953 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 RPS8P62241 208 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 SEC23AQ15436 765 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 ZNF579Q8NAF0 562 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 NELFBQ8WX92 580 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 SYMPKQ92797 1274 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 CELF1Q92879 486 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 CRNKL1Q9BZJ0 848 aaKnown RBP10.77□□□□□ -0.69
VCAN-210ENST00000513960 SMARCAL1Q9NZC9 954 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 SPATA31A5Q5VU36 1347 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 SPATA31A7Q8IWB4 1347 aa10.77□□□□□ -0.69
VCAN-210ENST00000513960 WTIPA6NIX2 430 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 KCNJ18B7U540 433 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 OPA1O60313 960 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 NDUFA10O95299 355 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 USP5P45974 858 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 KCNQ4P56696 695 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 KCNJ12Q14500 433 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 C3orf67Q6ZVT6 689 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 ANKRD13CQ8N6S4 541 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 SETDB2Q96T68 719 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 NYXQ9GZU5 481 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 SYF2O95926 243 aaKnown RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 ZNF18P17022 549 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 GUCY2FP51841 1108 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 ACTN3Q08043 901 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 KIF5AQ12840 1032 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 PPFIA1Q13136 1202 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 NBPF5PQ86XG9 351 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 ELOA2Q8IYF1 753 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 DDX60Q8IY21 1712 aaKnown RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 GOLGA6L7A0A1B0GV03 622 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 SEMA3EO15041 775 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 BMP15O95972 392 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 ERCC5P28715 1186 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 HIBADHP31937 336 aaKnown RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 CYLC1P35663 651 aaPredicted RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 HLTFQ14527 1009 aaKnown RBP eCLIP10.76□□□□□ -0.69
VCAN-210ENST00000513960 RRP36Q96EU6 259 aaKnown RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 ADD3Q9UEY8 706 aaKnown RBP10.76□□□□□ -0.69
VCAN-210ENST00000513960 ARAP2Q8WZ64 1704 aa10.76□□□□□ -0.69
VCAN-210ENST00000513960 PRPF3O43395 683 aaKnown RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 MTIF2P46199 727 aaKnown RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 PAK1Q13153 545 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 SMCR8Q8TEV9 937 aaPredicted RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 KAT2BQ92831 832 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 CCDC114Q96M63 670 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 AATFQ9NY61 560 aaKnown RBP eCLIP10.75□□□□□ -0.69
VCAN-210ENST00000513960 TFCP2L1Q9NZI6 479 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 PLCH1Q4KWH8 1693 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 SMIM22K7EJ46 135 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 MYBL2P10244 700 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 MCM7P33993 719 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 PAFAH1B1P43034 410 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 LINC00116Q8NCU8 138 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 ANKRD2Q9GZV1 360 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 PPANQ9NQ55 473 aaKnown RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 PLEKHA8P1O95397 391 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 CCDC172P0C7W6 258 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 IFT88Q13099 833 aa10.75□□□□□ -0.69
VCAN-210ENST00000513960 EZH2Q15910 746 aaKnown RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 FAM98CQ17RN3 349 aaKnown RBP10.75□□□□□ -0.69
VCAN-210ENST00000513960 BARGINQ6ZT62 677 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms