RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SIK1P57059 783 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 NLRP5P59047 1200 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 NOM1Q5C9Z4 860 aaKnown RBP10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 KLHL10Q6JEL2 608 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 WDR59Q6PJI9 974 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 ACRBPQ8NEB7 543 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 CCDC148Q8NFR7 591 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 SMARCC1Q92922 1105 aaPredicted RBP10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 ERGIC2Q96RQ1 377 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 C7orf25Q9BPX7 421 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 ACBD3Q9H3P7 528 aa10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 NIP7Q9Y221 180 aaKnown RBP eCLIP10.38□□□□□ -0.75
PDGFRA-208ENST00000509490 A0A0U1RQJ8 604 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 USP17L12C9JPN9 530 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 USP17L21D6R901 530 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 HERVK_113P62684 666 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 DYNLL1P63167 89 aaKnown RBP10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ST5P78524 1137 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 CKAP4Q07065 602 aaKnown RBP10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ITPK1Q13572 414 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 CERS3Q8IU89 383 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 SMYD4Q8IYR2 804 aaPredicted RBP10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 CCDC82Q8N4S0 544 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ATRIPQ8WXE1 791 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ANKRD2Q9GZV1 360 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ABCB6Q9NP58 842 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 CNTNAP4Q9C0A0 1308 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 ZC3H4Q9UPT8 1303 aaKnown RBP10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 CASP1P29466 404 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 PIK3AP1Q6ZUJ8 805 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 FAM114A1Q8IWE2 563 aa10.37□□□□□ -0.75
PDGFRA-208ENST00000509490 SPATA31A1Q5TZJ5 1347 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 TTC26A0AVF1 554 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 BICDL2A1A5D9 508 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 IVLP07476 585 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 ACTN2P35609 894 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 GYG1P46976 350 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 PPP4CP60510 307 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 VSNL1P62760 191 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 ZBED6P86452 979 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 MECOMQ03112 1051 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 STIM1Q13586 685 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 CASP8Q14790 479 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 C15orf52Q6ZUT6 534 aaKnown RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 TAB2Q9NYJ8 693 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 CWC15Q9P013 229 aaKnown RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 LUC7L2Q9Y383 392 aaKnown RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 CDK5RAP2Q96SN8 1893 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 ATAD5Q96QE3 1844 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 FAM205AQ6ZU69 1335 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 SMIM22K7EJ46 135 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 PSMA7O14818 248 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 CCNE1P24864 410 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 STAT6P42226 847 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 C12orf60Q5U649 245 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 DTHD1Q6ZMT9 781 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 FNBP4Q8N3X1 1017 aaPredicted RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 NUP88Q99567 741 aaPredicted RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 DUSP9Q99956 384 aaKnown RBP10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 SPZ1Q9BXG8 430 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 EDEM3Q9BZQ6 932 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 BARHL2Q9NY43 387 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 PCDHA6Q9UN73 950 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 PCDHA8Q9Y5H6 950 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 NHSQ6T4R5 1651 aa10.36□□□□□ -0.75
PDGFRA-208ENST00000509490 ESYT2A0FGR8 921 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 PALM3A6NDB9 673 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 RASSF10A6NK89 507 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ATP2B1P20020 1258 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 CCT6AP40227 531 aaKnown RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 UBXN1Q04323 297 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 MAP9Q49MG5 647 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 SPTY2D1Q68D10 685 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 TSGA10Q9BZW7 698 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 BLZF1Q9H2G9 400 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 MAD2L2Q9UI95 211 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 FOCADQ5VW36 1801 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 hCG_1984214I3L0E3 225 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 POLR3GO15318 223 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 CYLC1P35663 651 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ZSCAN26Q16670 478 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 BARGINQ6ZT62 677 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ZNF713Q8N859 430 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ZMYND12Q9H0C1 365 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 VPS16Q9H269 839 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ZNHIT6Q9NWK9 470 aaKnown RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ABCF2Q9UG63 623 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 GDAQ9Y2T3 454 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 CYP2D7A0A087X1C5 515 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 STXBP3O00186 592 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 TNFRSF8P28908 595 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 ATP6V1AP38606 617 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 IRX5P78411 483 aaPredicted RBP10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 MMGT1Q8N4V1 131 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 CPLX3Q8WVH0 158 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 CHP1Q99653 195 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 PDE11AQ9HCR9 933 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 IL17RBQ9NRM6 502 aa10.35□□□□□ -0.75
PDGFRA-208ENST00000509490 EXOC1Q9NV70 894 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms