RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-207ENST00000504761 TBC1D5Q92609 795 aa15.73■□□□□ 0.11
TCOF1-207ENST00000504761 LONP1P36776 959 aaKnown RBP15.73■□□□□ 0.11
TCOF1-207ENST00000504761 CDC37Q16543 378 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-207ENST00000504761 ARHGEF16Q5VV41 709 aa15.73■□□□□ 0.11
TCOF1-207ENST00000504761 FAM207AQ9NSI2 230 aaPredicted RBP15.73■□□□□ 0.11
TCOF1-207ENST00000504761 IVNS1ABPQ9Y6Y0 642 aa15.73■□□□□ 0.11
TCOF1-207ENST00000504761 TRAPPC10P48553 1259 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 NLRX1Q86UT6 975 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 CTNNBL1Q8WYA6 563 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-207ENST00000504761 PCDHB13Q9Y5F0 798 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 KIF13AQ9H1H9 1805 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 RPN1P04843 607 aaKnown RBP15.72■□□□□ 0.11
TCOF1-207ENST00000504761 STAT2P52630 851 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 PABPC4Q13310 644 aaKnown RBP eCLIP15.72■□□□□ 0.113e-6■■■■□ 20.4
TCOF1-207ENST00000504761 ANKRD35Q8N283 1001 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 NT5C3AQ9H0P0 336 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 AS3MTQ9HBK9 375 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L15C9J2P7 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L13C9JLJ4 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L11C9JVI0 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L18D6R9N7 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L22D6RA61 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L17D6RBQ6 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L19D6RCP7 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L20D6RJB6 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 NOP56O00567 594 aaKnown RBP15.72■□□□□ 0.11
TCOF1-207ENST00000504761 EEF2P13639 858 aaKnown RBP15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L24Q0WX57 530 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L6PQ6QN14 398 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 ZNF341Q9BYN7 854 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 FRMD4BQ9Y2L6 1034 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 ERLIN2O94905 339 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 MIER3Q7Z3K6 550 aa15.72■□□□□ 0.11
TCOF1-207ENST00000504761 USP17L10C9JJH3 530 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 GTPBP6O43824 516 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 SRBD1Q8N5C6 995 aaKnown RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 PRIMPOLQ96LW4 560 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 TNS2Q63HR2 1409 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 FGFR2P21802 821 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 TMEM179Q6ZVK1 233 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 CAPZA3Q96KX2 299 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 GTPBP4Q9BZE4 634 aaKnown RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 NLRC4Q9NPP4 1024 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 POLLQ9UGP5 575 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.71■□□□□ 0.118e-6■■□□□ 13.6
TCOF1-207ENST00000504761 MEIS1O00470 390 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 EPB41P11171 864 aaKnown RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 SYDE2Q5VT97 1194 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 DPH6Q7L8W6 267 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 USP37Q86T82 979 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 RGS22Q8NE09 1264 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 TDRD7Q8NHU6 1098 aaKnown RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 GOLPH3LQ9H4A5 285 aa15.71■□□□□ 0.11
TCOF1-207ENST00000504761 SRPRBQ9Y5M8 271 aaKnown RBP15.71■□□□□ 0.11
TCOF1-207ENST00000504761 FAM205CA6NFA0 338 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 UBE2Q2LH0YL09 131 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 PFKFB3Q16875 520 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-207ENST00000504761 PAF1Q8N7H5 531 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 FLT1P17948 1338 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 KRT86O43790 486 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 SLFN14P0C7P3 912 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 LRRC41Q15345 812 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 SLC10A5Q5PT55 438 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 CCDC122Q5T0U0 273 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 WDR19Q8NEZ3 1342 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 EXOC3O60645 756 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 RDXP35241 583 aaKnown RBP15.7■□□□□ 0.1
TCOF1-207ENST00000504761 SMTNP53814 917 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 BIRC3Q13489 604 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 MORC3Q14149 939 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 SLC15A2Q16348 729 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 SPECC1LQ69YQ0 1117 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 NCAPG2Q86XI2 1143 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 NEDD1Q8NHV4 660 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 CRACR2AQ9BSW2 395 aa15.7■□□□□ 0.1
TCOF1-207ENST00000504761 ALDH8A1Q9H2A2 487 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-207ENST00000504761 PNMA6FA0A0J9YX94 578 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 ORC4O43929 436 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 PPP1R2P41236 205 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 KRT83P78385 493 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 CBX1P83916 185 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 GOLGA8FQ08AF8 430 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 GOLGA8DPQ0D2H9 430 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 HLTFQ14527 1009 aaKnown RBP eCLIP15.69■□□□□ 0.1
TCOF1-207ENST00000504761 TMEM260Q9NX78 707 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 F5H6K3 240 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 KLRC3Q07444 240 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 ADGRA1Q86SQ6 560 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 KCNJ18B7U540 433 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 CDR1P51861 262 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 KCNJ12Q14500 433 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 FAM83BQ5T0W9 1011 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 TMEM87AQ8NBN3 555 aa15.69■□□□□ 0.1
TCOF1-207ENST00000504761 ZNF526Q8TF50 670 aaPredicted RBP15.69■□□□□ 0.1
TCOF1-207ENST00000504761 CTDNEP1O95476 244 aa15.68■□□□□ 0.1
TCOF1-207ENST00000504761 FOSP01100 380 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-207ENST00000504761 LRCH2Q5VUJ6 765 aa15.68■□□□□ 0.1
TCOF1-207ENST00000504761 TTBK2Q6IQ55 1244 aa15.68■□□□□ 0.1
TCOF1-207ENST00000504761 GLG1Q92896 1179 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms