RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L17D6RBQ6 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L19D6RCP7 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L20D6RJB6 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 PDHXO00330 501 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 BMP3P12645 472 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 IRX3P78415 501 aaPredicted RBP11.71□□□□□ -0.53
NUP54-203ENST00000504173 USP17L24Q0WX57 530 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 SYNE3Q6ZMZ3 975 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 RASGRP2Q7LDG7 609 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 SGMS1Q86VZ5 419 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 GMCL1Q96IK5 515 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 C11orf49Q9H6J7 331 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 PNMA3Q9UL41 463 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 GABRQQ9UN88 632 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 SLC45A1Q9Y2W3 748 aa11.71□□□□□ -0.53
NUP54-203ENST00000504173 MUC6Q6W4X9 2439 aa11.71□□□□□ -0.54
NUP54-203ENST00000504173 PDHBP11177 359 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 HOXA7P31268 230 aaPredicted RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 NEK4P51957 841 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 SAMD1Q6SPF0 538 aaPredicted RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 CATSPERGQ6ZRH7 1159 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 KCTD1Q719H9 257 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 ZNF654Q8IZM8 581 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 NUP133Q8WUM0 1156 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 ATXN2LQ8WWM7 1075 aaKnown RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 BRF1Q92994 677 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 PARK7Q99497 189 aaKnown RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 KIF2CQ99661 725 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 ASCC2Q9H1I8 757 aaPredicted RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 TTYH1Q9H313 450 aaPredicted RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 NAP1L2Q9ULW6 460 aaPredicted RBP11.7□□□□□ -0.54
NUP54-203ENST00000504173 SLC12A7Q9Y666 1083 aa11.7□□□□□ -0.54
NUP54-203ENST00000504173 FRMPD2Q68DX3 1309 aaPredicted RBP11.69□□□□□ -0.54
NUP54-203ENST00000504173 KLF18A0A0U1RQI7 1052 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 FLOT1O75955 427 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 DDAH1O94760 285 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 PARP1P09874 1014 aaKnown RBP11.69□□□□□ -0.54
NUP54-203ENST00000504173 SNHG28P0DPA3 235 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 CYP2C8P10632 490 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 BCRP11274 1271 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 ELNP15502 786 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 MDM2Q00987 491 aaPredicted RBP11.69□□□□□ -0.54
NUP54-203ENST00000504173 ZNF543Q08ER8 600 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 APOBRQ0VD83 1088 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 IKQ13123 557 aaPredicted RBP11.69□□□□□ -0.54
NUP54-203ENST00000504173 RABEP1Q15276 862 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 ASPRV1Q53RT3 343 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 RAB11FIP4Q86YS3 637 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 FBXL16Q8N461 479 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 USP38Q8NB14 1042 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 ADAMTS19Q8TE59 1207 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 SMCR8Q8TEV9 937 aaPredicted RBP11.69□□□□□ -0.54
NUP54-203ENST00000504173 MYL10Q9BUA6 226 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 AGXT2Q9BYV1 514 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.69□□□□□ -0.54
NUP54-203ENST00000504173 GPCPD1Q9NPB8 672 aa11.69□□□□□ -0.54
NUP54-203ENST00000504173 PFASO15067 1338 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 GOLGA8BA8MQT2 603 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 TMEM232C9JQI7 657 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 GOLGA8HP0CJ92 632 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 CALM1P0DP23 149 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 CALM2P0DP24 149 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 CALM3P0DP25 149 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 RXRAP19793 462 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 FLT3LGP49771 235 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 STAT2P52630 851 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 AK2P54819 239 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 TROAPQ12815 778 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 TOB2Q14106 344 aaPredicted RBP11.68□□□□□ -0.54
NUP54-203ENST00000504173 COG2Q14746 738 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 GRM4Q14833 912 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 ANKRD1Q15327 319 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 GPATCH4Q5T3I0 446 aaKnown RBP11.68□□□□□ -0.54
NUP54-203ENST00000504173 APOA5Q6Q788 366 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 FAM160B2Q86V87 743 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 MICU3Q86XE3 530 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 CTCFLQ8NI51 663 aaPredicted RBP11.68□□□□□ -0.54
NUP54-203ENST00000504173 CHURC1Q8WUH1 139 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 SLF1Q9BQI6 1058 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 FBXO28Q9NVF7 368 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
NUP54-203ENST00000504173 FEM1BQ9UK73 627 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 BRPF3Q9ULD4 1205 aa11.68□□□□□ -0.54
NUP54-203ENST00000504173 SPDYE16A6NNV3 312 aaPredicted RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 GOLGA8AA7E2F4 631 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 ZBTB43O43298 467 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 KIF5BP33176 963 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 HERVK_113P62684 666 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 SMAD3P84022 425 aaKnown RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 TTBK2Q6IQ55 1244 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 NOL8Q76FK4 1167 aaKnown RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 ALYREFQ86V81 257 aaKnown RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 CCDC144CPQ8IYA2 1237 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 GTF3C2Q8WUA4 911 aaPredicted RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 KIFC2Q96AC6 838 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 ASB2Q96Q27 587 aa11.67□□□□□ -0.54
NUP54-203ENST00000504173 UHRF1Q96T88 793 aaPredicted RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 P2RX7Q99572 595 aaKnown RBP11.67□□□□□ -0.54
NUP54-203ENST00000504173 LARP6Q9BRS8 491 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms