RNA–Protein interactions for RNA: ENST00000497539.5

SNRNP200-208, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 1 (best)

Gene SNRNP200, Length 2,666 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-208ENST00000497539 MTMR4Q9NYA4 1195 aa13.1□□□□□ -0.31
SNRNP200-208ENST00000497539 EP400Q96L91 3159 aa13.1□□□□□ -0.31
SNRNP200-208ENST00000497539 SLU7O95391 586 aaKnown RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 PARP1P09874 1014 aaKnown RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 NLRP5P59047 1200 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 ORC2Q13416 577 aaPredicted RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 DPCR1Q3MIW9 517 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 ASPRV1Q53RT3 343 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 E4F1Q66K89 784 aaPredicted RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 ARL6IP4Q66PJ3 421 aaKnown RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 TMC6Q7Z403 805 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 SLC16A10Q8TF71 515 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 CCDC17Q96LX7 622 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 RIOX1Q9H6W3 641 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 IFNKQ9P0W0 207 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 SERPINB13Q9UIV8 391 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 FAM205CA6NFA0 338 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 NEMFO60524 1076 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 SHMT1P34896 483 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 WWC2Q6AWC2 1192 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 TRIML1Q8N9V2 468 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 SPATA20Q8TB22 786 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 CCDC12Q8WUD4 166 aaPredicted RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 ERO1AQ96HE7 468 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 PYM1Q9BRP8 204 aaKnown RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 XPO4Q9C0E2 1151 aaKnown RBP13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 MYH4Q9Y623 1939 aa13.09□□□□□ -0.31
SNRNP200-208ENST00000497539 ACTN4O43707 911 aaKnown RBP13.08□□□□□ -0.31
SNRNP200-208ENST00000497539 HLA-DOAP06340 250 aa13.08□□□□□ -0.31
SNRNP200-208ENST00000497539 SARSP49591 514 aaKnown RBP13.08□□□□□ -0.31
SNRNP200-208ENST00000497539 ZMYND12Q9H0C1 365 aa13.08□□□□□ -0.31
SNRNP200-208ENST00000497539 hCG_1642624A0A1W2PR95 340 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 KLRF2D3W0D1 207 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 G3V3G9 751 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 EN1Q05925 392 aaPredicted RBP13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 LONRF3Q496Y0 759 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 DCAF8Q5TAQ9 597 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 PPP1R18Q6NYC8 613 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 ARMCX5Q6P1M9 558 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 SH3RF1Q7Z6J0 888 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 C4orf32Q8N8J7 132 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 CSRNP2Q9H175 543 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 STX8Q9UNK0 236 aa13.08□□□□□ -0.32
SNRNP200-208ENST00000497539 GRIN1Q05586 938 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 CCDC96Q2M329 555 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 MXD3Q9BW11 206 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 LAD1O00515 517 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 PDHBP11177 359 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 CHRNA5P30532 468 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 CNNM3Q8NE01 707 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 PPP1R13BQ96KQ4 1090 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 DBNDD1Q9H9R9 158 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 PCDHA6Q9UN73 950 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 PCDHA8Q9Y5H6 950 aa13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 BRCA1P38398 1863 aaKnown RBP13.07□□□□□ -0.32
SNRNP200-208ENST00000497539 TTLL1O95922 423 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 AKR1B1P15121 316 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 VEGFAP15692 232 aaPredicted RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 GOLGA8FQ08AF8 430 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 GOLGA8DPQ0D2H9 430 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 SWT1Q5T5J6 900 aaKnown RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 TYW1BQ6NUM6 668 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 RRP36Q96EU6 259 aaKnown RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 TRERF1Q96PN7 1200 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 SYNPO2Q9UMS6 1093 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 WNT7AO00755 349 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 PPP1R12AO14974 1030 aaPredicted RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 ENTPD3O75355 529 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 PRPHP41219 470 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 NCAPHQ15003 741 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 ZRSR1Q15695 479 aaKnown RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 RTKN2Q8IZC4 609 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 MKL1Q969V6 931 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 RASSF4Q9H2L5 321 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 SCNN1DP51172 638 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 PICALMQ13492 652 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 POSTNQ15063 836 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 TATDN1Q6P1N9 297 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 PIK3AP1Q6ZUJ8 805 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 KRT25Q7Z3Z0 450 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 HOMER1Q86YM7 354 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 MTMR8Q96EF0 704 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 CCDC34Q96HJ3 373 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 FAM198AQ9UFP1 575 aa13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 ZBTB12Q9Y330 459 aaPredicted RBP13.06□□□□□ -0.32
SNRNP200-208ENST00000497539 KLHL33A6NCF5 533 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 F8W031 263 aaPredicted RBP13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 LONP1P36776 959 aaKnown RBP13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 BAG6P46379 1132 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 CCDC93Q567U6 631 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 NOM1Q5C9Z4 860 aaKnown RBP13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 GPKOWQ92917 476 aaPredicted RBP eCLIP13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 EPC1Q9H2F5 836 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 GSCP56915 257 aaPredicted RBP13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 PTGDRQ13258 359 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 PNOCQ13519 176 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 MORC3Q14149 939 aa13.05□□□□□ -0.32
SNRNP200-208ENST00000497539 FOXP4Q8IVH2 680 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms