RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	HHAT	Q5VTY9	493 aa		13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	SYT10	Q6XYQ8	523 aa		13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	TRIM7	Q9C029	511 aa		13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	HERC5	Q9UII4	1024 aa	Known RBP	13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	SERPINB13	Q9UIV8	391 aa		13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	DOCK1	Q14185	1865 aa		13.16	□□□□□ -0.3
BRCA1-222	ENST00000493919	BICDL2	A1A5D9	508 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	GSG1L2	A8MUP6	293 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	USP17L12	C9JPN9	530 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	USP17L21	D6R901	530 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	AOC2	O75106	756 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	SNUPN	O95149	360 aa	Known RBP	13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	CCDC102A	Q96A19	550 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	SLC10A4	Q96EP9	437 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	NACAP1	Q9BZK3	213 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	NAPB	Q9H115	298 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	DNAJC18	Q9H819	358 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	ATAD5	Q96QE3	1844 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	SLC10A3	P09131	477 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	ZNF394	Q53GI3	561 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	BMP2KL	Q5H9B9	411 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	STK11IP	Q8N1F8	1099 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	CCDC82	Q8N4S0	544 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	RSPH1	Q8WYR4	309 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	THOC1	Q96FV9	657 aa	Known RBP	13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	OTUD5	Q96G74	571 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	SNCAIP	Q9Y6H5	919 aa		13.15	□□□□□ -0.3
BRCA1-222	ENST00000493919	MYH8	P13535	1937 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	MINDY4B	A8MYZ0	360 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	TBC1D12	O60347	775 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	TEX35	Q5T0J7	233 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	IFNL3	Q8IZI9	196 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	STAG2	Q8N3U4	1231 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	DNAJC5G	Q8N7S2	189 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	DYNLL2	Q96FJ2	89 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	GBP4	Q96PP9	640 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	UNC45A	Q9H3U1	944 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	A1CF	Q9NQ94	594 aa	Known RBP	13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	THSD7B	Q9C0I4	1608 aa		13.14	□□□□□ -0.31
BRCA1-222	ENST00000493919	PHF20L1	A8MW92	1017 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	FAM155A	B1AL88	458 aa	Predicted RBP	13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	SMIM22	K7EJ46	135 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	NEBL	O76041	1014 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	GDF11	O95390	407 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	CHML	P26374	656 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	STIP1	P31948	543 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	NOG	Q13253	232 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	E2F5	Q15329	346 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	MYOCD	Q8IZQ8	938 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	SLC44A5	Q8NCS7	719 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	ARMC2	Q8NEN0	867 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	KIF18A	Q8NI77	898 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	OPTN	Q96CV9	577 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	WNK4	Q96J92	1243 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	EHD4	Q9H223	541 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	IL25	Q9H293	177 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	PICK1	Q9NRD5	415 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZNF112	Q9UJU3	913 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	SFSWAP	Q12872	951 aa	Known RBP	13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	GIMAP6	Q6P9H5	292 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	FILIP1	Q7Z7B0	1213 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	SCYL3	Q8IZE3	742 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	RNF214	Q8ND24	703 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	BICD1	Q96G01	975 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZIC5	Q96T25	663 aa		13.13	□□□□□ -0.31
BRCA1-222	ENST00000493919	FOXP2	O15409	715 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	MAP3K10	Q02779	954 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	TBC1D8B	Q0IIM8	1120 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	RRP1B	Q14684	758 aa	Known RBP	13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	C12orf60	Q5U649	245 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	KCNV1	Q6PIU1	500 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	CCDC84	Q86UT8	332 aa	Predicted RBP	13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	PACS2	Q86VP3	889 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	IQUB	Q8NA54	791 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	RUFY2	Q8WXA3	655 aa		13.12	□□□□□ -0.31
BRCA1-222	ENST00000493919	SPDYE5	A6NIY4	337 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	CTNND1	O60716	968 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	HSPD1	P10809	573 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	NAT2	P11245	290 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	GJA5	P36382	358 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	POU5F1	Q01860	360 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	PRPF4B	Q13523	1007 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	NOL9	Q5SY16	702 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	SPRYD7	Q5W111	196 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	METTL16	Q86W50	562 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	ERO1B	Q86YB8	467 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	TRIM42	Q8IWZ5	723 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	ZNF483	Q8TF39	744 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	TRIM6	Q9C030	488 aa	Predicted RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	USP25	Q9UHP3	1055 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	NRBP1	Q9UHY1	535 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	RABL2B	Q9UNT1	228 aa		13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	RRP15	Q9Y3B9	282 aa	Known RBP	13.11	□□□□□ -0.31
BRCA1-222	ENST00000493919	CFAP69	A5D8W1	941 aa		13.11	□□□□□ -0.31

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