RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DLGAP5Q15398 846 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CERKLQ49MI3 558 aaPredicted RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SRLQ86TD4 932 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MRFAP1L1Q96HT8 127 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 EIF3CQ99613 913 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TAB2Q9NYJ8 693 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MYO1BO43795 1136 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CMA1P23946 247 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCDC181Q5TID7 509 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 REXO1Q8N1G1 1221 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TBC1D22AQ8WUA7 517 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TMEM260Q9NX78 707 aa12.01□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SLIT3O75094 1523 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CLNS1AP54105 237 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 GRM1Q13255 1194 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TTBK2Q6IQ55 1244 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MMS22LQ6ZRQ5 1243 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 POTEDQ86YR6 584 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NELFCDQ8IXH7 590 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TDRD7Q8NHU6 1098 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FAM76AQ8TAV0 307 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SCLT1Q96NL6 688 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 DESI2Q9BSY9 194 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 EXOC1Q9NV70 894 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 AKR1B1P15121 316 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 GNA11P29992 359 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NFIAQ12857 509 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PLEKHA4Q9H4M7 779 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SPDYE3A6NKU9 549 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP27XA6NNY8 438 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TMEM232C9JQI7 657 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ZEB2O60315 1214 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PRR29P0C7W0 189 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 HOXA13P31271 388 aaPredicted RBP12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 DDR1Q08345 913 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FBXO33Q7Z6M2 555 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ATRIPQ8WXE1 791 aa12□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TCRBV5S4A2TA0A5A2 114 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 IQCEQ6IPM2 695 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SHC4Q6S5L8 630 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 EFCAB13Q8IY85 973 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 YY1AP1Q9H869 796 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 POLR3EQ9NVU0 708 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 IMPACTQ9P2X3 320 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FOXP2O15409 715 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 GUCY2CP25092 1073 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ICA1Q05084 483 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NONOQ15233 471 aaKnown RBP eCLIP11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 LONRF2Q1L5Z9 754 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CUL5Q93034 780 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 RIOK1Q9BRS2 568 aaKnown RBP11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SAMSN1Q9NSI8 373 aaKnown RBP11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 HDAC9Q9UKV0 1011 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L15C9J2P7 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L13C9JLJ4 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L11C9JVI0 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L18D6R9N7 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L22D6RA61 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L17D6RBQ6 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L19D6RCP7 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L20D6RJB6 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TRIM21P19474 475 aaKnown RBP11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 RBM6P78332 1123 aaKnown RBP11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PDE4DQ08499 809 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L24Q0WX57 530 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 USP17L6PQ6QN14 398 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ZNF408Q9H9D4 720 aa11.99□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 A0A087WUV0 522 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NDUFAB1O14561 156 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCDC175P0C221 793 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 BRD3Q15059 726 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TDRD12Q587J7 1177 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 ZNF569Q5MCW4 686 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SNX29Q8TEQ0 813 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PPP1R13BQ96KQ4 1090 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 RNF26Q9BY78 433 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CAPN7Q9Y6W3 813 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TOPAZ1Q8N9V7 1692 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CTAGE9A4FU28 777 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 BAG6P46379 1132 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NLRP12P59046 1061 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 SEPT2Q15019 361 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TBCKQ8TEA7 893 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCDC114Q96M63 670 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CXorf56Q9H5V9 222 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CPSF2Q9P2I0 782 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 LRWD1Q9UFC0 647 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 MYO6Q9UM54 1294 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 FAN1Q9Y2M0 1017 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 DAGLAQ9Y4D2 1042 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PCDHA1Q9Y5I3 950 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 RIC1Q4ADV7 1423 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 UBXN1Q04323 297 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 CCDC40Q4G0X9 1142 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 KRT79Q5XKE5 535 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 NCAPH2Q6IBW4 605 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 TMTC3Q6ZXV5 915 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 KIAA1328Q86T90 577 aa11.98□□□□□ -0.49
MSH5-SAPCD1-207ENST00000493662 PDGFDQ9GZP0 370 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms