RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 PRPF38AQ8NAV1 312 aaKnown RBP10.58□□□□□ -0.72
HDAC3-211ENST00000491581 BADQ92934 168 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 EVI5LQ96CN4 794 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 DDX11Q96FC9 970 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 TEX13BQ9BXU2 312 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 GPCPD1Q9NPB8 672 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 TOMM22Q9NS69 142 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 NEDD4P46934 1319 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 SYNRGQ9UMZ2 1314 aa10.58□□□□□ -0.72
HDAC3-211ENST00000491581 KBTBD13C9JR72 458 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 ZBED4O75132 1171 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 ADAMTS4O75173 837 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 HSPD1P10809 573 aaKnown RBP10.57□□□□□ -0.72
HDAC3-211ENST00000491581 ALAS1P13196 640 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 PDE4AP27815 886 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 BEX3Q00994 111 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 TLE2Q04725 743 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 PDE4BQ07343 736 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 IKQ13123 557 aaPredicted RBP10.57□□□□□ -0.72
HDAC3-211ENST00000491581 SHHQ15465 462 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 EEPD1Q7L9B9 569 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 SMC5Q8IY18 1101 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 GMCL1P1Q8NEA9 526 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 NACAP1Q9BZK3 213 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 KATNBL1Q9H079 304 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 PDLIM7Q9NR12 457 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 PDGFCQ9NRA1 345 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 PRR12Q9ULL5 1215 aa10.57□□□□□ -0.72
HDAC3-211ENST00000491581 SUPT16HQ9Y5B9 1047 aaKnown RBP10.57□□□□□ -0.72
HDAC3-211ENST00000491581 A0A1W2PQ45 241 aaPredicted RBP10.56□□□□□ -0.72
HDAC3-211ENST00000491581 A0A1W2PQY0 241 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 PQBP1O60828 265 aaKnown RBP10.56□□□□□ -0.72
HDAC3-211ENST00000491581 RARBP10826 455 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 SDSP20132 328 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 SLC1A4P43007 532 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 CCDC96Q2M329 555 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 RCSD1Q6JBY9 416 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 SKAP1Q86WV1 359 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 CCDC144CPQ8IYA2 1237 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 ANKRD35Q8N283 1001 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 ARRDC4Q8NCT1 418 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 TMEM47Q9BQJ4 181 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 A1CFQ9NQ94 594 aaKnown RBP10.56□□□□□ -0.72
HDAC3-211ENST00000491581 RNF146Q9NTX7 359 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.56□□□□□ -0.72
HDAC3-211ENST00000491581 FEM1BQ9UK73 627 aa10.56□□□□□ -0.72
HDAC3-211ENST00000491581 COL6A3P12111 3177 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CTAGE5O15320 804 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 MSCO60682 206 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 GOLGA8HP0CJ92 632 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 STAT2P52630 851 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 ACVR2BQ13705 512 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 SNX17Q15036 470 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 KCNA10Q16322 511 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CCDC144BQ3MJ40 725 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 MCMDC2Q4G0Z9 681 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CWC27Q6UX04 472 aaKnown RBP10.55□□□□□ -0.72
HDAC3-211ENST00000491581 ARMCX2Q7L311 632 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CHD1LQ86WJ1 897 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 DEFB123Q8N688 67 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 STAG1Q8WVM7 1258 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 TRERF1Q96PN7 1200 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 HELLSQ9NRZ9 838 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 SLC5A4Q9NY91 659 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 ANAPC4Q9UJX5 808 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 PHF24Q9UPV7 400 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CTDP1Q9Y5B0 961 aaPredicted RBP10.55□□□□□ -0.72
HDAC3-211ENST00000491581 GBF1Q92538 1859 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 CCDC171Q6TFL3 1326 aa10.55□□□□□ -0.72
HDAC3-211ENST00000491581 NFIBO00712 420 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 ATP2A1O14983 1001 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 AKR1A1P14550 325 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 ACLYP53396 1101 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 NUCB1Q02818 461 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 CCSAPQ6IQ19 270 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-211ENST00000491581 MAMDC4Q6UXC1 1216 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 SLC30A10Q6XR72 485 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 FBXO16Q8IX29 292 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-211ENST00000491581 FAM133AQ8N9E0 248 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 GMCL1Q96IK5 515 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 ZBTB47Q9UFB7 747 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-211ENST00000491581 DIS3Q9Y2L1 958 aaKnown RBP10.54□□□□□ -0.72
HDAC3-211ENST00000491581 TAF6LQ9Y6J9 622 aa10.54□□□□□ -0.72
HDAC3-211ENST00000491581 MYH6P13533 1939 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 A0A1W2PPC1 479 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 ORC4O43929 436 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 SLC3A2P08195 630 aaKnown RBP10.53□□□□□ -0.72
HDAC3-211ENST00000491581 FGRP09769 529 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 C6orf222P0C671 652 aaPredicted RBP10.53□□□□□ -0.72
HDAC3-211ENST00000491581 GSPT1P15170 499 aaKnown RBP10.53□□□□□ -0.72
HDAC3-211ENST00000491581 CAPN2P17655 700 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 NOVP48745 357 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 FAAP100Q0VG06 881 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 ALX1Q15699 326 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 LRRFIP1Q32MZ4 808 aaKnown RBP10.53□□□□□ -0.72
HDAC3-211ENST00000491581 LRIT3Q3SXY7 679 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 FAM109BQ6ICB4 259 aaPredicted RBP10.53□□□□□ -0.72
HDAC3-211ENST00000491581 NSMFQ6X4W1 530 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 KLHDC9Q8NEP7 349 aa10.53□□□□□ -0.72
HDAC3-211ENST00000491581 TBC1D5Q92609 795 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms