RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 DCDC2CA8MYV0 355 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 TMEM232C9JQI7 657 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 CST5P28325 142 aaPredicted RBP12.24□□□□□ -0.45
TTC28-207ENST00000490475 ALX1Q15699 326 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 TRIM60Q495X7 471 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 RCSD1Q6JBY9 416 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 CENPQQ7L2Z9 268 aaPredicted RBP12.24□□□□□ -0.45
TTC28-207ENST00000490475 SLC17A8Q8NDX2 589 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 CCDC136Q96JN2 1154 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 SEZ6LQ9BYH1 1024 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 PRDM5Q9NQX1 630 aaPredicted RBP12.24□□□□□ -0.45
TTC28-207ENST00000490475 ISY1Q9ULR0 285 aaKnown RBP12.24□□□□□ -0.45
TTC28-207ENST00000490475 STX8Q9UNK0 236 aa12.24□□□□□ -0.45
TTC28-207ENST00000490475 LTBP2Q14767 1821 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 ELP1O95163 1332 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 ZMYM6O95789 1325 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 A0A1W2PQ45 241 aaPredicted RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 A0A1W2PQY0 241 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 ORC4O43929 436 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 PGK1P00558 417 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 CLTBP09497 229 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 SDSP20132 328 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 SLC4A3P48751 1232 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 NMIQ13287 307 aaPredicted RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 ACVR2BQ13705 512 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 TTC22Q5TAA0 569 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 CCDC174Q6PII3 467 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 LRRC47Q8N1G4 583 aaKnown RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 FERMT2Q96AC1 680 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 GLT1D1Q96MS3 346 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 RAVER2Q9HCJ3 691 aaKnown RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 STARD7Q9NQZ5 370 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 PDLIM7Q9NR12 457 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 MTMR10Q9NXD2 777 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 ZHX1Q9UKY1 873 aaPredicted RBP12.23□□□□□ -0.45
TTC28-207ENST00000490475 RIPK3Q9Y572 518 aa12.23□□□□□ -0.45
TTC28-207ENST00000490475 LOC102724159A0A0B4J2E5 919 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 A0A0D9SFI3 127 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 POTEB2H3BUK9 544 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 ADAMTS4O75173 837 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 SNAI1O95863 264 aaPredicted RBP12.22□□□□□ -0.45
TTC28-207ENST00000490475 GSPT1P15170 499 aaKnown RBP12.22□□□□□ -0.45
TTC28-207ENST00000490475 RAG1P15918 1043 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 ACLYP53396 1101 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 TLE2Q04725 743 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 PWP2Q15269 919 aaKnown RBP12.22□□□□□ -0.45
TTC28-207ENST00000490475 MCMDC2Q4G0Z9 681 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 ZNF697Q5TEC3 545 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 ANKRD33Q7Z3H0 272 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 DCAF4Q8WV16 495 aa12.22□□□□□ -0.45
TTC28-207ENST00000490475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.22□□□□□ -0.45
TTC28-207ENST00000490475 SYNRGQ9UMZ2 1314 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 TMEM265A0A087WTH1 108 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 KIAA0355O15063 1070 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 FOXP2O15409 715 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 ZEB2O60315 1214 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 RANBP6O60518 1105 aaKnown RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 CABYRO75952 493 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 FGRP09769 529 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 C6orf222P0C671 652 aaPredicted RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 TAL1P17542 331 aaPredicted RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 MCCP23508 829 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 SMAD3P84022 425 aaKnown RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 VPS53Q5VIR6 699 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 ARMCX2Q7L311 632 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 KLHDC9Q8NEP7 349 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 BADQ92934 168 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 MPHOSPH6Q99547 160 aaKnown RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 RNF41Q9H4P4 317 aaPredicted RBP12.21□□□□□ -0.45
TTC28-207ENST00000490475 RNF146Q9NTX7 359 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 TCP11L1Q9NUJ3 509 aa12.21□□□□□ -0.45
TTC28-207ENST00000490475 MCM3APO60318 1980 aa12.21□□□□□ -0.46
TTC28-207ENST00000490475 TLR3O15455 904 aaKnown RBP12.2□□□□□ -0.46
TTC28-207ENST00000490475 NOVP48745 357 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 GJA9P57773 515 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 NKX3-2P78367 333 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 KCNA10Q16322 511 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 CCDC144BQ3MJ40 725 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 CCDC178Q5BJE1 867 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 ERICH6BQ5W0A0 696 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 CWC27Q6UX04 472 aaKnown RBP12.2□□□□□ -0.46
TTC28-207ENST00000490475 ZNF589Q86UQ0 364 aaPredicted RBP12.2□□□□□ -0.46
TTC28-207ENST00000490475 CCDC144CPQ8IYA2 1237 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 FAM133AQ8N9E0 248 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 TTC14Q96N46 770 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 TRERF1Q96PN7 1200 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 UPF3AQ9H1J1 476 aaKnown RBP12.2□□□□□ -0.46
TTC28-207ENST00000490475 TOMM22Q9NS69 142 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 HOMER2Q9NSB8 354 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 TMEM39AQ9NV64 488 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 ADD3Q9UEY8 706 aaKnown RBP12.2□□□□□ -0.46
TTC28-207ENST00000490475 Q9Y3F1 56 aa12.2□□□□□ -0.46
TTC28-207ENST00000490475 A0A0U1RQG5 324 aaPredicted RBP12.19□□□□□ -0.46
TTC28-207ENST00000490475 TRIM43BA6NCK2 446 aa12.19□□□□□ -0.46
TTC28-207ENST00000490475 B4DLN1 442 aa12.19□□□□□ -0.46
TTC28-207ENST00000490475 HIP1O00291 1037 aa12.19□□□□□ -0.46
TTC28-207ENST00000490475 PQBP1O60828 265 aaKnown RBP12.19□□□□□ -0.46
TTC28-207ENST00000490475 ICAM1P05362 532 aa12.19□□□□□ -0.46
TTC28-207ENST00000490475 TOP1P11387 765 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms