RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 DCAF4Q8WV16 495 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 SYAP1Q96A49 352 aaPredicted RBP18.29■□□□□ 0.52
SYNE1-227ENST00000489156 GMCL1Q96IK5 515 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 CAPNS2Q96L46 248 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 ZIC5Q96T25 663 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 SH3GLB2Q9NR46 395 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 KIF28PB7ZC32 967 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 KLRF2D3W0D1 207 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 CETPP11597 493 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 BMP3P12645 472 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 ASPRV1Q53RT3 343 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 CAVIN1Q6NZI2 390 aaKnown RBP18.29■□□□□ 0.52
SYNE1-227ENST00000489156 FASTKD5Q7L8L6 764 aaKnown RBP18.29■□□□□ 0.52
SYNE1-227ENST00000489156 PROCA1Q8NCQ7 364 aaPredicted RBP18.29■□□□□ 0.52
SYNE1-227ENST00000489156 USP28Q96RU2 1077 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 PHF20Q9BVI0 1012 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 RPAP3Q9H6T3 665 aaPredicted RBP18.29■□□□□ 0.52
SYNE1-227ENST00000489156 GPCPD1Q9NPB8 672 aa18.29■□□□□ 0.52
SYNE1-227ENST00000489156 WDR46O15213 610 aaKnown RBP18.28■□□□□ 0.52
SYNE1-227ENST00000489156 HSPA6P17066 643 aa18.28■□□□□ 0.52
SYNE1-227ENST00000489156 ZNF543Q08ER8 600 aa18.28■□□□□ 0.52
SYNE1-227ENST00000489156 TTBK2Q6IQ55 1244 aa18.28■□□□□ 0.52
SYNE1-227ENST00000489156 NOSTRINQ8IVI9 506 aa18.28■□□□□ 0.52
SYNE1-227ENST00000489156 DIS3L2Q8IYB7 885 aaKnown RBP18.28■□□□□ 0.52
SYNE1-227ENST00000489156 BRI3BPQ8WY22 251 aa18.28■□□□□ 0.52
SYNE1-227ENST00000489156 GOLGA6L4A6NEF3 574 aa18.27■□□□□ 0.52
SYNE1-227ENST00000489156 YEATS4O95619 227 aa18.27■□□□□ 0.52
SYNE1-227ENST00000489156 CPVLQ9H3G5 476 aa18.27■□□□□ 0.52
SYNE1-227ENST00000489156 PARP14Q460N5 1801 aa18.27■□□□□ 0.51
SYNE1-227ENST00000489156 TMEM232C9JQI7 657 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 AOC2O75106 756 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 NASPP49321 788 aaPredicted RBP18.26■□□□□ 0.51
SYNE1-227ENST00000489156 GPAT2Q6NUI2 795 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 TANGO6Q9C0B7 1094 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 BRMS1Q9HCU9 246 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 KCNJ14Q9UNX9 436 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 RLFQ13129 1914 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 MANSC4A6NHS7 340 aaPredicted RBP18.26■□□□□ 0.51
SYNE1-227ENST00000489156 BTBD18B2RXH4 712 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 CYTH3O43739 400 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 SLC16A2P36021 539 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 GPATCH4Q5T3I0 446 aaKnown RBP18.26■□□□□ 0.51
SYNE1-227ENST00000489156 SAMD1Q6SPF0 538 aaPredicted RBP18.26■□□□□ 0.51
SYNE1-227ENST00000489156 PTPN18Q99952 460 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 UBA5Q9GZZ9 404 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 FBXO28Q9NVF7 368 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 VPS54Q9P1Q0 977 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 AGTPBP1Q9UPW5 1226 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 PCNTO95613 3336 aa18.26■□□□□ 0.51
SYNE1-227ENST00000489156 BTBD19C9JJ37 291 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 VEGFBP49765 207 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 IKQ13123 557 aaPredicted RBP18.25■□□□□ 0.51
SYNE1-227ENST00000489156 NOGQ13253 232 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 LINC00301Q8NCQ3 95 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 KCNG4Q8TDN1 519 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 RIOX1Q9H6W3 641 aa18.25■□□□□ 0.51
SYNE1-227ENST00000489156 hCG_1642624A0A1W2PR95 340 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 TESPA1A2RU30 521 aaPredicted RBP18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L15C9J2P7 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L13C9JLJ4 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L11C9JVI0 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L18D6R9N7 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L22D6RA61 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L17D6RBQ6 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L19D6RCP7 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L20D6RJB6 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 CALML3P27482 149 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 KRT2P35908 639 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 USP17L24Q0WX57 530 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 RILPL1Q5EBL4 403 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 ANO1Q5XXA6 986 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 CATSPERGQ6ZRH7 1159 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 TMEM63CQ9P1W3 806 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 FLOT1O75955 427 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 HOXA7P31268 230 aaPredicted RBP18.24■□□□□ 0.51
SYNE1-227ENST00000489156 STAT2P52630 851 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 CEBPZQ03701 1054 aaKnown RBP18.24■□□□□ 0.51
SYNE1-227ENST00000489156 ZSCAN23Q3MJ62 389 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 GALNT17Q6IS24 598 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 FAM43AQ8N2R8 423 aa18.24■□□□□ 0.51
SYNE1-227ENST00000489156 RRP36Q96EU6 259 aaKnown RBP18.24■□□□□ 0.51
SYNE1-227ENST00000489156 INHBEP58166 350 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 ZNF445P59923 1031 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 SLC35G1Q2M3R5 365 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 CCDC148Q8NFR7 591 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 SHISA4Q96DD7 197 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 PGBD1Q96JS3 809 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 FEM1BQ9UK73 627 aa18.23■□□□□ 0.51
SYNE1-227ENST00000489156 hCG_1984214I3L0E3 225 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 PDHXO00330 501 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 IGF2BP3O00425 579 aaKnown RBP eCLIP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 SLC39A14Q15043 492 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 ANKRD23Q86SG2 305 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 ZNF713Q8N859 430 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 CCDC12Q8WUD4 166 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 CHURC1Q8WUH1 139 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 KIFC2Q96AC6 838 aa18.22■□□□□ 0.51
SYNE1-227ENST00000489156 FTOQ9C0B1 505 aaKnown RBP eCLIP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 ASCC2Q9H1I8 757 aaPredicted RBP18.22■□□□□ 0.51
SYNE1-227ENST00000489156 VAT1LQ9HCJ6 419 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms